PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G116900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 681aa    MW: 76315.9 Da    PI: 7.5337
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G116900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.67.1e-1756150289
                FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.....dgkwevtkleleH 85 
                         fY+ +A+++GFs+r+++++ +    +  t+r fvC + g++  +  + + +++r+r+++r+gC+a +++ + +       +w+vt ++ +H
  Sevir.7G116900.1.p  56 FYSGFARRCGFSIRRHRTEGKdGVGRGLTRRYFVCHRAGSAPAKPLAgAPRSQRNRSSSRCGCQAYMRIGRGEaaagaPPEWRVTGFSDHH 146
                         9*************9998877355667999**********98888775788899***************998865444458********** PP

                FAR1  86 nHel 89 
                         nH+l
  Sevir.7G116900.1.p 147 NHAL 150
                         **99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-1456150IPR004330FAR1 DNA binding domain
PfamPF105513.7E-20275366IPR018289MULE transposase domain
PROSITE profilePS5096610.732552588IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-8554588IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-5563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MTPAEPASLL ECYASGEDDS PDEARVSLET AASSAESAAA PYVGQRFPTH DAAYVFYSGF  60
ARRCGFSIRR HRTEGKDGVG RGLTRRYFVC HRAGSAPAKP LAGAPRSQRN RSSSRCGCQA  120
YMRIGRGEAA AGAPPEWRVT GFSDHHNHAL LGQDKVRLLP AYRVISGADR DRILMFAKAG  180
ISVQQMMRIM ELEKCVEPGS LPFTEKDVRN LMQSFWKVDH EEDESVDLLR MCKDFKEKDP  240
SLMFEFTKDV NNRLQNIAWT YSASVQAYEM FGDAVVFDTT HRLSALDMAL GIWVGLNNYG  300
MPCFFACVLL REVNQESFAW ALQVFLNFMN RKAPQMILTD QNMCLKEAIE KEFPSTKHAL  360
CIWLIAARFP SWLNVNLGER YNDWENEFSR LCNMENTVAF DIGWNDMVNC YGLHGNRHIA  420
SLFASRNLWA LPYLRGHFSA GLTASPSVSK SINAFIQRFL SIQTRLANFI EQVSVGVNYK  480
DQVGEQETMQ QNLQNISLKT ASPIEGHAAA LLTPYAFSKL QDELVEAAHY ASFHLEENIF  540
LVRHHTEAVG GYSVTWNQRE ELISCSCQMF ECLGILCRHA LRVLSTLNYL QVPDTYLPVR  600
WRRIQTPPSK SLNGAPPQSQ RVASGRVGAL QSLVAALVSE AAKSNERMDL ATHEASVLLS  660
RIKQQPVSMH VSGEHAPRLQ *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G116900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975704.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLK3YDJ20.0K3YDJ2_SETIT; Uncharacterized protein
STRINGSi012297m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151711516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]