PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G106000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 230aa    MW: 23685.3 Da    PI: 6.977
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G106000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-2082131255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++aa+++++g
  Sevir.7G106000.1.p  82 KYRGVRRRP-WGKWAAEIRDPQ----KaARVWLGTFATAEDAARAYDAAALRFRG 131
                         8********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.7E-3381140IPR001471AP2/ERF domain
PROSITE profilePS5103225.8782139IPR001471AP2/ERF domain
PfamPF008473.6E-1482131IPR001471AP2/ERF domain
CDDcd000183.52E-1982138No hitNo description
SMARTSM003801.1E-3682145IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2382140IPR016177DNA-binding domain
PRINTSPR003671.2E-118394IPR001471AP2/ERF domain
PRINTSPR003671.2E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVAPTPPPMV SSEHAQAVET AAIVSALTHV VASGRGPPRP APAIVVPWRH ADDSGSSAAG  60
HGQEQLTGVA GQGTAAQAPA RKYRGVRRRP WGKWAAEIRD PQKAARVWLG TFATAEDAAR  120
AYDAAALRFR GSRARLNFPE DAAARRARDA EAASAAASAG PPAALLESQA AGDDMADYLE  180
YSRILEGGEP SGIMDGIFGG DANGRFLDSW SIGTSPPSSG SDAAATLFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2378139163ATERF1
3gcc_A1e-2378139163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G106000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066321e-69AL606632.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042L16, complete sequence.
GenBankAP0149601e-69AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-69CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684509.11e-157ethylene-responsive transcription factor RAP2-6-like
TrEMBLA0A368RU201e-155A0A368RU20_SETIT; Uncharacterized protein
TrEMBLK3Y9S51e-155K3Y9S5_SETIT; Uncharacterized protein
STRINGSi010967m1e-156(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.15e-22ERF family protein