PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G064600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 356aa    MW: 40017.7 Da    PI: 5.6323
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G064600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like47.93.1e-15166212451
             G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                         ++W+  LH++F++a+e L G+  A P++i  lm+v+g+ ++h+ SHLQ
  Sevir.7G064600.1.p 166 ICWNDYLHRKFLHALEIL-GEGAASPRNIEILMNVEGVNRKHISSHLQ 212
                         79****************.9**************************** PP
2Response_reg47.88.1e-17151251110
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         v++vd+++  ++  r++l   +y ++++ +++ +al+ l+ +   +D+ l+ + m +m+G+++l   re ++++++i+++ + +++ ++++
  Sevir.7G064600.1.p  15 VIVVDEDKHHANSTRSMLCTLNY-HATAYTSPIKALDFLEGHAqeVDMALVAVHMEEMHGFQFLDVVREDHKNIQVIMMSNETTMDIMKRC 104
                         799********************.***************777667********************************************** PP

                         HHTTESEEEESS--HHHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvka 110
                         +k+Ga   + Kp+d   ++++
  Sevir.7G064600.1.p 105 IKLGACFLVNKPIDAHTIHNM 125
                         **************9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521724.55E-2211129IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23007.7E-2312134No hitNo description
SMARTSM004487.3E-613126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.88514130IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-1615125IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.56E-1316129No hitNo description
Gene3DG3DSA:1.10.10.603.7E-13161212IPR009057Homeodomain-like
SuperFamilySSF466897.7E-9161214IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-12166212IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGKRKKLSPT HGFSVIVVDE DKHHANSTRS MLCTLNYHAT AYTSPIKALD FLEGHAQEVD  60
MALVAVHMEE MHGFQFLDVV REDHKNIQVI MMSNETTMDI MKRCIKLGAC FLVNKPIDAH  120
TIHNMWRHID FGNSRMHNIK KSLQGNGEEQ DVSYWKESAK TKKGYICWND YLHRKFLHAL  180
EILGEGAASP RNIEILMNVE GVNRKHISSH LQCRTSASKS ESAKSHQESP NNSPDIQQEE  240
MTADEDMPHA QMGSFSDNNA HAAMRRSIQF STMYDESQYL YFSSSDGGVD MMEDRNDDTC  300
AFGFSALVSA AETFSADGTK EMLNNNSSEE QDCQGDKVGK AVKLVEYSDS EADEI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G064600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977897.11e-168two-component response regulator ORR29
TrEMBLA0A368RU900.0A0A368RU90_SETIT; Uncharacterized protein
STRINGPavir.Gb02032.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.11e-21response regulator 10