PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G061500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 346aa    MW: 39470.7 Da    PI: 6.1287
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G061500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like43.95.3e-14132182355
             G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +l Wtp L ++F++a+e L G + AtP +i  +m+v+++ ++++  HLQk+R 
  Sevir.7G061500.1.p 132 QLMWTPFLQRKFLQALELL-G-KAATPTKIQLIMNVNSIGRKQISAHLQKHRK 182
                         789****************.4.67***************************96 PP
2Response_reg29.44e-1158531109
                         SHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
        Response_reg  31 dgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                         ++ eal+ lk+++  +D  l+ ++m +m+G+++l   re++++l++i++++  + +++++ +++Ga+  + Kp d + +++
  Sevir.7G061500.1.p   5 SPIEALNFLKDHEkdMDFALVAVNMKEMHGFQFLDISRESHKNLQVIMMSDDMTWPTVKRSVELGARFLVKKPLDANTICD 85 
                         566899999666556*******************9889999**********************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011018.202191IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521726.69E-13395IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.7E-13493No hitNo description
PfamPF000721.1E-8585IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.03E-6890No hitNo description
Gene3DG3DSA:1.10.10.603.3E-13128186IPR009057Homeodomain-like
SuperFamilySSF466892.15E-8131186IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-15132183IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVYTSPIEAL NFLKDHEKDM DFALVAVNMK EMHGFQFLDI SRESHKNLQV IMMSDDMTWP  60
TVKRSVELGA RFLVKKPLDA NTICDIWQHL DHKLLKCEKI KYLFQGIEGE WDDVFKSEKR  120
LRGGANKQKV TQLMWTPFLQ RKFLQALELL GKAATPTKIQ LIMNVNSIGR KQISAHLQKH  180
RKKVEKELRN TDAKTCNNGA SSSQPLRICE TDPNTCQYNP KFQPADRLDE DMYWDQKETT  240
EETQGKNTYE AMRRALQLGT VFDESQLPND PPVKEASKWE VDMMGDGKCR TDLTYPSGNK  300
NENSETHNAG NAKGVMEKGD SDSGDAQERV LKIVAYSDSE DDEAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G061500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9437542e-56EU943754.1 Zea mays clone 1685039 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825246.11e-164two-component response regulator ORR29-like
TrEMBLK3YEV50.0K3YEV5_SETIT; Uncharacterized protein
STRINGSi012772m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.14e-15response regulator 10