PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G060700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 362aa    MW: 39871.7 Da    PI: 9.8999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G060700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.4e-10113196995
                         HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   9 dvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         d +++  + +p kf+e+h   ++    ++t ++  +sg+++++kl  + +  ++++++GW++F k +++ e   ++++++g++ f+l+v 
  Sevir.7G060700.1.p 113 DFMEK--MLIPAKFVEQHipmELL--DNRTAIVFGPSGKVYSIKL--KMGWAGVFFAGGWSQFLKFHDITEANALLLRYEGNMVFTLKVY 196
                         44443..899********976333..5669999************..888888********************************88774 PP
2B350.14.9e-16267350186
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         ++k++++  + k + +++p  f++++g+ +++++tl+   +s  sW+v++    k+ ++  ++GWk+F+++n +kegD ++F +++
  Sevir.7G060700.1.p 267 WLKKEISTRMIKIC-ISFPAAFCNAIGLREACTVTLKTSLSSTSSWQVRV-LPYKDTSHQVGSGWKSFCEENXIKEGDLCTFNVIE 350
                         57888888888888.9*************99987777777889*******.3444445999*********************9664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.219177IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-52279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-52679IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-14100200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-15101200IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.911103199IPR003340B3 DNA binding domain
CDDcd100178.02E-11104196No hitNo description
SMARTSM010194.9E-5106199IPR003340B3 DNA binding domain
PfamPF023621.7E-7112196IPR003340B3 DNA binding domain
SMARTSM010190.0035268361IPR003340B3 DNA binding domain
PfamPF023623.2E-13268350IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-15270360IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.729281361IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-15281360IPR015300DNA-binding pseudobarrel domain
CDDcd100177.91E-7311346No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
RIPDELAGEI GAAEALVVGP AGGKVKFWSV EVGKDGDGAF LGRGWPEFAE ACGVATGWLV  60
LRHRGRGVLS AKAFDATCCF RELGAPAPPA GEATASSKGS THKPQFIRVL PKDFMEKMLI  120
PAKFVEQHIP MELLDNRTAI VFGPSGKVYS IKLKMGWAGV FFAGGWSQFL KFHDITEANA  180
LLLRYEGNMV FTLKVYGPNG YQREFNHKEN RGRQRTARNT FTSSRKRKSR NESLSSDDQN  240
KQKGSMASLK NASSRAQGVY VIGPPAWLKK EISTRMIKIC ISFPAAFCNA IGLREACTVT  300
LKTSLSSTSS WQVRVLPYKD TSHQVGSGWK SFCEENXIKE GDLCTFNVIE MMLWHVIIDR  360
C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223228SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G060700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975298.11e-166putative B3 domain-containing protein Os04g0347400 isoform X2
RefseqXP_022684232.11e-165putative B3 domain-containing protein Os04g0347400
TrEMBLK3YE690.0K3YE69_SETIT; Uncharacterized protein
STRINGSi012530m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-13B3 family protein