PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.7G022600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TCP | ||||||||
Protein Properties | Length: 173aa MW: 17864.2 Da PI: 9.0551 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.1 | 9.3e-32 | 58 | 125 | 6 | 73 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +++ ++h+kv gR+RRvR++a +aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt+ +++++ Sevir.7G022600.1.p 58 RSSADRHAKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAEPSIIAATGTGVTPEEAP 125 5788********************************************************77777333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-27 | 59 | 139 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 24.47 | 60 | 114 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MSSSSELVLY NLVPAPQTLN PPPPHAPAAA VSGDLTISTA VAAPPQEPLR GRARRPARSS 60 ADRHAKVAGR GRRVRIPAMV AARVFQLTRE LGHRTDGETI EWLLRQAEPS IIAATGTGVT 120 PEEAPSALVP VSPAAATASL MHVPYYTALL MQPPPTADSA SGSGAAAEEN NN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.7G022600.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004975168.1 | 1e-118 | transcription factor PCF1-like | ||||
Swissprot | O23875 | 5e-56 | PCF1_ORYSJ; Transcription factor PCF1 | ||||
TrEMBL | A0A3L6Q550 | 5e-98 | A0A3L6Q550_PANMI; Transcription factor PCF1-like | ||||
STRING | GRMZM2G096610_P01 | 3e-86 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14172 | 26 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.7G022600.1.p |