PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G256600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 393aa    MW: 41894 Da    PI: 8.3428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G256600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.3e-07217239123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cgk F+r  nL+ H+r H
  Sevir.6G256600.1.p 217 HYCQVCGKGFKRDANLRMHMRAH 239
                         68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.64E-6215242No hitNo description
PROSITE profilePS5015712.653217244IPR007087Zinc finger, C2H2
SMARTSM003550.0034217239IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-6217243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
SMARTSM00355140273306IPR015880Zinc finger, C2H2-like
SMARTSM0035547311337IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MIGGGGNPYF VQNQLFHHAL DGMDGGFMEP PASDPADAHC HALLYNLSVL RDKVQQLQPL  60
VGLAVEHDGP GGAAVSSAGA VIQEIITAAS SMMYAFQQLC GLHAGAQSST TAANAAPAVT  120
NNIAAAAVGH AKNSGMPDTG PQAAVVMDHH VMQQQWQPQH HHRCGYGYDN RIHARTAVPS  180
QSQSQPATAA TTAEEEAGGG GTIIELDAAE LLAKYTHYCQ VCGKGFKRDA NLRMHMRAHG  240
DEYKSSAALA NPAKAAGAGD SAAAATTSSR SYYSCPQEGC RWNRKHAKFQ PLKSVICAKN  300
HYKRSHCPKM YVCNRCNRKH FSVLSDLRTH EKHCGDHRWV CSCGTSFSRK DKLIGHLALF  360
TGHHPAVPLD RQPNGGGRRL SSSTASASQL EE*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G256600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0632901e-159AK063290.1 Oryza sativa Japonica Group cDNA clone:001-113-E02, full insert sequence.
GenBankAP0045871e-159AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
GenBankAP0055441e-159AP005544.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0604E01.
GenBankAP0149641e-159AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126161e-159CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683035.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 2
SwissprotQ0WT241e-102STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A368RQA70.0A0A368RQA7_SETIT; Uncharacterized protein
STRINGSi013894m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.12e-77C2H2 family protein