PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G256500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 662aa    MW: 71597.5 Da    PI: 4.329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G256500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.6e-53241521129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+ePwdLp  +++++++++wyfFs+ d+k+a+  r+nrat+ gyWk+tgkd
  Sevir.6G256500.1.p  24 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKLEPWDLPsrSRLRSRDSQWYFFSRLDRKHANRARTNRATSGGYWKTTGKD 113
                         579***************************.99**************95338888999********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +ev + + + vg+kktLvf+ grapkge+t+Wvmheyrle
  Sevir.6G256500.1.p 114 REVRH-GPRIVGMKKTLVFHAGRAPKGERTNWVMHEYRLE 152
                         *****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-6117172IPR003441NAC domain
PROSITE profilePS5100559.44124172IPR003441NAC domain
PfamPF023652.1E-2826151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MTHPSSSSSS APPPAAAAAE ATSLAPGFRF HPTDEELVSY YLKRKVLGRP LKVDAIAEVD  60
LYKLEPWDLP SRSRLRSRDS QWYFFSRLDR KHANRARTNR ATSGGYWKTT GKDREVRHGP  120
RIVGMKKTLV FHAGRAPKGE RTNWVMHEYR LEGDEAAGIP QDSFVVCRIF QKAGPGPQNG  180
AQYGAPFVEE EWEEDDEDVG LLPVEGDAVV DHEVPPGPKE IPGALEKGYL QMSDLIQGLG  240
DQNGNGTIGL PISDTSNNSN HSEDVDGNSG DILSDPNLGS NFLQYVEPGE QNSLMLSDNM  300
ISNANAGDFF NNSSPSDGFL ELKDFADAAN LDYPLGNEST VWPSDGWAWK TPNSLEAVNG  360
ANNDIPPLPD DQTFQPDELE QLLQSIQEDS HFGSSIIDPS HSSITNSVMP EDDSLMFYDA  420
PFDSTICDDG FRQVNGILSS PATNLSGIGM VDDGMPYYDA TDDNLFNDIL GSIQQPSGSS  480
HAFNGPVLTQ EVNNTMYTYS PTQKVLEPNF VVGAPSSARL PEAGSQLNCV VLPDGQAKSS  540
TYGKGFVKIL DSISAPPAFA LEPANLCKSL APISGARPNT IHVSAEVISI GSLAVASGPD  600
KWAQHKDQGM ELLFTDFEPG TRVHCGCNPI TTVLRGGFCL VFFSAIMLLV SYEVGMCIYG  660
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-47191729168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G256500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0639170.0BT063917.1 Zea mays full-length cDNA clone ZM_BFc0120A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974231.10.0NAC domain-containing protein 17
TrEMBLK3YGL00.0K3YGL0_SETIT; Uncharacterized protein
STRINGSi013361m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-73NAC domain containing protein 2