PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G233000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 228aa    MW: 24057.4 Da    PI: 10.2823
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G233000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.33.2e-32201601128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk...rknr.atksgyWkat 86 
                         lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd+p+  +a+e e yfF+ r   + +g       r at+sg+Wk  
  Sevir.6G233000.1.p  20 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVpDLYSLDPWDIPA--DASEGEKYFFAVRTAGAGSGCsksGGARaATASGRWKPA 107
                         79****************************.8999999***********4..4567799*****99988855411144566899******* PP

                 NAM  87 gkdkevlsk.....kgelvglkktLvfykgrapkge......ktdWvmheyrl 128
                         gk+k+v+       ++ lvg+k+tL+f + r++k++       + Wvmheyrl
  Sevir.6G233000.1.p 108 GKEKPVVLPrpcggGSLLVGVKRTLTFVTRRKKKASapsdslAAGWVMHEYRL 160
                         *******99899877777**********66555554444555789******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-4216186IPR003441NAC domain
PROSITE profilePS5100543.00220186IPR003441NAC domain
PfamPF023653.1E-2121160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MESAPVLVRH AGGVAALRQL PPGFRFRPTD EELVVQYLRR KAFGVPLPAA VIPVVPDLYS  60
LDPWDIPADA SEGEKYFFAV RTAGAGSGCS KSGGARAATA SGRWKPAGKE KPVVLPRPCG  120
GGSLLVGVKR TLTFVTRRKK KASAPSDSLA AGWVMHEYRL AAPLHKNGCR LAQAEGEWVV  180
CRVFQRSNRP RRRPAPAGAG HDAAASPTSS SASCVTDGSD QEEEVSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-272018820170NAC domain-containing protein 19
3swm_B2e-272018820170NAC domain-containing protein 19
3swm_C2e-272018820170NAC domain-containing protein 19
3swm_D2e-272018820170NAC domain-containing protein 19
3swp_A2e-272018820170NAC domain-containing protein 19
3swp_B2e-272018820170NAC domain-containing protein 19
3swp_C2e-272018820170NAC domain-containing protein 19
3swp_D2e-272018820170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G233000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0865717e-71BT086571.1 Zea mays full-length cDNA clone ZM_BFc0184N14 mRNA, complete cds.
GenBankDQ2454917e-71DQ245491.1 Zea mays clone 16115 mRNA sequence.
GenBankDQ2460957e-71DQ246095.1 Zea mays clone 16151 mRNA sequence.
GenBankEU9709067e-71EU970906.1 Zea mays clone 353721 NAC domain-containing protein 68 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974022.11e-160NAC domain-containing protein 18
TrEMBLK3YJI91e-159K3YJI9_SETIT; Uncharacterized protein
STRINGSi014408m1e-159(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.15e-27NAC domain containing protein 46