PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G213600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 347aa    MW: 37292.5 Da    PI: 7.1439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G213600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-52291561128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelv++yL++kv +  +     i+evd++++ePw+Lp++++ +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+e
  Sevir.6G213600.1.p  29 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-VDIAEVDLNRCEPWELPEAARMGEREWYFFSLRDRKYPTGMRTNRATGAGYWKATGKDRE 118
                         79************************9777.34***************9888999************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         vl++ +g+l g+kktLvfykgrap+gekt+Wv+heyrl
  Sevir.6G213600.1.p 119 VLNTaTGALLGMKKTLVFYKGRAPRGEKTKWVLHEYRL 156
                         **9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-6219179IPR003441NAC domain
PROSITE profilePS5100558.01829179IPR003441NAC domain
PfamPF023653.2E-2730156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MHHHQAMGDA LWDLLGEEMA AAAAGEHGLP PGFRFHPTDE ELVTFYLAAK VFNGACCGVD  60
IAEVDLNRCE PWELPEAARM GEREWYFFSL RDRKYPTGMR TNRATGAGYW KATGKDREVL  120
NTATGALLGM KKTLVFYKGR APRGEKTKWV LHEYRLDGDF AAARRSCKEE WVICRILHKA  180
GDQYSKMMMV KNPYYLPMGM DPSSFCFQQD PAAAPLPNPS GCTTVAGVPF HPGAHPGMQL  240
PLLPSSQGKI TSGICGFPAS ACMQEPPAHG SGGGSSNAMG MPPYHHPFAS LAAGGKPAPP  300
PPSQVGVNGA GPQEPPPPPP ASWLEAYVQH GGYLYEMGPG AAPRGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-48151821171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G213600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612700.0BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974840.10.0NAC domain-containing protein 92
SwissprotQ9S8513e-89NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLK3YML70.0K3YML7_SETIT; Uncharacterized protein
STRINGSi015498m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.16e-87NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]