PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G206000.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 690aa    MW: 74940.4 Da    PI: 6.2999
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G206000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31281337259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+  ++++ei+Y+g+H h+
  Sevir.6G206000.2.p 281 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPNCPVKKKVERSQ-KGHITEIVYKGSHSHP 337
                         8****************************************.9**************7 PP
2WRKY104.46e-33493551159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++d k v++tYeg+Hnhe
  Sevir.6G206000.2.p 493 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYAGCTVRKHVERASNDLKSVITTYEGKHNHE 551
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.32275339IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-28277339IPR003657WRKY domain
SuperFamilySSF1182906.93E-26278339IPR003657WRKY domain
SMARTSM007741.8E-35280338IPR003657WRKY domain
PfamPF031061.0E-24281337IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.9E-37478553IPR003657WRKY domain
SuperFamilySSF1182909.15E-29485553IPR003657WRKY domain
PROSITE profilePS5081137.516488553IPR003657WRKY domain
SMARTSM007741.6E-37493552IPR003657WRKY domain
PfamPF031062.9E-25494551IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAGTDNRRAL MEDWMLPSPS PRTVMSSFLN EEFSSCPFSS IFSDNGSSKP LDAIEKSKTL  60
VDSSVEETVQ NTKAPLQLES NLFRANQEST SHGGLAERMA ARAGFGVLKI DTSRVSSSAP  120
IRSPVTIPPG VSPRELLESP VFLPNAIAQP SPTTGKLPFL MPNNFKSMIS SVPKKAEDYF  180
HDDCAFSFQP ILMSKPPSFS TVDKGLSAVH QNQSLANYSQ ELSLQANTTA TKDETEENLV  240
KPSTCDSMSD NDHPSPADEQ EESEDNQNEE DSSVPVIAPA EDGYNWRKYG QKQVKNSEHP  300
RSYYKCTHPN CPVKKKVERS QKGHITEIVY KGSHSHPLPP PNRRPSVPSS HVNDLQADGS  360
ENFCSKPGHN TETSRAMAPN DHFQDVHSEV LERNLSGSLT TTEIADTCVM ESQEAVDVSS  420
TLSSNEKDER ATQCTIPSTY RGDDDETESK RRKMEVSAAA NTTTNAIDMA AMASRAVREP  480
RIVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT YAGCTVRKHV ERASNDLKSV  540
ITTYEGKHNH EVPAARNSSG HPNSGSNAAP QGSNLHRRPE PAQPSIPQLN AAAAYGSLGL  600
PPQLSAASGG FSFGLLPPGM AVPVPSLGTF MPAPIPGHPP TMQGCTGLVV PRGEVKVNLE  660
EQSRLQVANG NAMAAYQQFM GRLPQGPQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-36281554878Probable WRKY transcription factor 4
2lex_A5e-36281554878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G206000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702098.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 2
TrEMBLK3YGK60.0K3YGK6_SETIT; Uncharacterized protein
STRINGSi013374m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-120WRKY DNA-binding protein 2