PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G198900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 294aa MW: 30541.1 Da PI: 9.9099 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.8e-05 | 83 | 102 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F ++ L H+r Sevir.6G198900.1.p 83 PCTECGKRFASWKALFGHMR 102 6******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.492 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.3E-4 | 82 | 104 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.12E-8 | 83 | 104 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 84 | 104 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.1E-8 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.12E-8 | 198 | 225 | No hit | No description |
Pfam | PF13912 | 2.1E-11 | 203 | 227 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.9 | 203 | 225 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 203 | 225 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 205 | 225 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MATPLQPAAS RSSPRPPPPP LPLPPPPPHH DTTLTLALAL PPPALACALS PRPLQARRPR 60 TDGAASSSSF ARVRSSPTGD TLPCTECGKR FASWKALFGH MRCHPERQWR GITPPPHFRH 120 GHHQQQHAVG APPLAVAAAA AGQQFTVQER EIAASLLMLA GARTPGVGKG KKGVLASSSA 180 KKKSYSTPAS SPTAAAPPKC DDHKCSVCAR EFATGQALGG HKRCHWEKAC AEVMAVATPS 240 SCSPLLATSE VAAAVVATTL DLNLPPPGTM PALPWKSDED GSLNAALDLK LGY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G198900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975188 | 1e-45 | EU975188.1 Zea mays clone 483820 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682354.1 | 1e-158 | zinc finger protein ZAT3 | ||||
TrEMBL | A0A368R2M1 | 1e-157 | A0A368R2M1_SETIT; Uncharacterized protein | ||||
STRING | Si004657m | 1e-152 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 3e-20 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G198900.1.p |