PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G164100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 322aa    MW: 35825.8 Da    PI: 5.2394
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G164100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1515.8e-4741371128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                         lp+GfrF Ptdeel+++yL++k+ +++++   +i++vd+yk+ePwdLp +    +++a+ +e yfF++r +ky++g r++rat+ gyWk+t
  Sevir.6G164100.1.p   4 LPAGFRFFPTDEELITYYLARKAMDDSFTS-PAIRDVDLYKSEPWDLPcEqqaaAAAADLQEGYFFCRRGSKYPSGVRARRATRLGYWKST 93 
                         799************************999.78**************9534443222344588**************************** PP

                 NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         gkdk+v+ +  +g+lvg++ktLvfy+grap+gekt Wvmhey++
  Sevir.6G164100.1.p  94 GKDKAVHGRddGGRLVGTRKTLVFYRGRAPRGEKTGWVMHEYAM 137
                         *******99888999***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-533161IPR003441NAC domain
PROSITE profilePS5100554.3454161IPR003441NAC domain
PfamPF023652.0E-255136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFLPAGFRF FPTDEELITY YLARKAMDDS FTSPAIRDVD LYKSEPWDLP CEQQAAAAAA  60
DLQEGYFFCR RGSKYPSGVR ARRATRLGYW KSTGKDKAVH GRDDGGRLVG TRKTLVFYRG  120
RAPRGEKTGW VMHEYAMGDK SSSALLRGAQ SEWVICKVFM RKQHSSSGER KVTTEETVHD  180
QASITPGHVL LPMLPDGCDG EQEAAPPPVV TDSRSRHTVS YSGAQAMDGN EKDPHHHRPS  240
WFNHDDQLGA HCSTLSVMQK QSDDDADYYL PELLEYDDYD DLSNPGLGLL DSGGEASQSS  300
EIISAAIGPL YLDGLYWNFC F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-40416415171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G164100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683498.10.0NAC domain-containing protein 100
TrEMBLK3YL520.0K3YL52_SETIT; Uncharacterized protein
STRINGSi014973m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.18e-59NAC domain containing protein 100