PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G150700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 279aa    MW: 30459.5 Da    PI: 4.5507
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G150700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.5e-2081134356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  Sevir.6G150700.1.p  81 KKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 134
                         56789************************************************9 PP
2HD-ZIP_I/II132.51.6e-4280171192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrl++eqv+lLE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+dy++Lk+aydal+++++ L +++++Lr+++
  Sevir.6G150700.1.p  80 EKKRRLTAEQVQLLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDYDRLKAAYDALAADHQGLLADNDSLRAQV 170
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 k 92 
                          
  Sevir.6G150700.1.p 171 V 171
                         6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.38E-1975138IPR009057Homeodomain-like
PROSITE profilePS5007118.20476136IPR001356Homeobox domain
SMARTSM003896.9E-1979140IPR001356Homeobox domain
CDDcd000864.41E-1881137No hitNo description
PfamPF000464.2E-1781134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-2182143IPR009057Homeodomain-like
PRINTSPR000314.5E-6107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000314.5E-6116132IPR000047Helix-turn-helix motif
PfamPF021831.9E-16136178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDPGRVGVDS GGARRGGGGG GGAQMLLFGG GGSANSNGFF RGVPMAVLGM DDAVRVGKRP  60
FFTTHEELME EEYYDEQAPE KKRRLTAEQV QLLERSFEEE NKLEPERKTE LARRLGMAPR  120
QVAVWFQNRR ARWKTKQLET DYDRLKAAYD ALAADHQGLL ADNDSLRAQV VTLTEKLQGK  180
ETSPSATNAA QEADDLDEHT AASGTEKLLA QQLRDDLLSS GDCTGHGALS SEEEDGGVVS  240
DEGCSFHLPD ALFAAAEVIH HGAEEAQLFN WTSWYWNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G150700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0378990.0BT037899.1 Zea mays full-length cDNA clone ZM_BFb0201F17 mRNA, complete cds.
GenBankEU9597010.0EU959701.1 Zea mays clone 219449 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds.
GenBankKJ7277340.0KJ727734.1 Zea mays clone pUT5675 HB transcription factor (HB7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973433.10.0homeobox-leucine zipper protein HOX5
SwissprotQ6ZA741e-114HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBLK3YJ090.0K3YJ09_SETIT; Uncharacterized protein
STRINGSi014228m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-53homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]