PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G131100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 303aa MW: 33130.8 Da PI: 6.3758

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G131100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.7e-33	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH+rFveav+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sevir.6G131100.1.p 43 RQRLRWTNELHDRFVEAVTQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 97 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.757	40	100	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-18	42	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.8E-32	42	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.1E-26	44	98	IPR006447	Myb domain, plants
Pfam	PF00249	7.8E-9	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-23	129	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MYQPNPSIGP TQSNPAPHDQ MGPGDGAMVP HNGGNSNPNM AARQRLRWTN ELHDRFVEAV 60 TQLGGPDRAT PKGVLRIMGV PGLTIYHVKS HLQKYRLAKY IPDPSTDDNK AEKKDPGDLL 120 AALEGSSTMQ ISEALKLQME VQKRLHEQLE VQRQLQLRIE AQGKYLQKII EEQQRISGAG 180 ASRDTSSEQL PDSERTNPST PVPTSESPLQ AVPFSKDNGS RVEPMESASH DDLPHGEPVT 240 PDSNCRPGSP TLSPKHERAA KRQRGSSDGT PIADGDFALP HHIFESSTDS EFQQCSMPYS 300 SH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	43	100	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G131100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973261.1	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	3e-95	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	K3YIT3	0.0	K3YIT3_SETIT; Uncharacterized protein
STRING	Si014152m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-81	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.6G131100.1.p