PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.6G072400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 925aa MW: 102467 Da PI: 9.5903 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.5 | 8.4e-07 | 207 | 226 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+f + G C++G +C+F H Sevir.6G072400.1.p 207 PCRDFVA-GRCRRGTNCRFLH 226 7******.************* PP | |||||||
2 | zf-CCCH | 27.5 | 5.3e-09 | 289 | 311 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 te C +fa+ G C +G++C+FaHg Sevir.6G072400.1.p 289 TEQCYNFAK-GRCARGASCRFAHG 311 899******.*************9 PP | |||||||
3 | zf-CCCH | 23.4 | 1e-07 | 350 | 369 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G C++G++C++ H Sevir.6G072400.1.p 350 PCKFFAE-GRCRRGENCPYLH 369 8******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0024 | 203 | 228 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.295 | 207 | 229 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.9E-5 | 207 | 228 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.093 | 207 | 226 | No hit | No description |
PROSITE profile | PS50103 | 15.497 | 286 | 313 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 286 | 312 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-6 | 289 | 312 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 289 | 311 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.896 | 345 | 372 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 345 | 371 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-7 | 346 | 370 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-5 | 348 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-5 | 349 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 925 aa Download sequence Send to blast |
MAGDSRKQRS KWDAKEGPHD IVEISEDESL PDKTGGHRKG DVHPKPDTSM HHGGAGHEKE 60 QADGFNKDTK ELQPKAPSER PQLLRAADER DEWSKAAANQ GMNRYADDRR RGDGWGTARN 120 RGYSSRAPSD PDAWRPRSRS PSPRGVWNRS RRNRSRSRSR SRSRNRSRSR SRSIGRGRGR 180 SRSPYFADRG PEWRVERGRT SGGPALPCRD FVAGRCRRGT NCRFLHEDGG QRPFEDHYPA 240 DPRERYGFQN KEFMDSREPN DYLRNRQSRD HYDDGPWERS EPRRDYRSTE QCYNFAKGRC 300 ARGASCRFAH GDSASHGGWR DEARESVHDR VGPDSSYGNR TEHRRVNKNP CKFFAEGRCR 360 RGENCPYLHE EAPQSQIGVS APDEPLNYSD GRSARGDYSN WGEQNNAMRA TSQILSRDDR 420 ENPISQSIGR NDSHYEYENR LSKDAGKSQY QIIPQEDFRS QVENKHEVAV SQQPQLLTPV 480 QITADNMNNE NISGMGGQNA PATEMSMQSG MHSANIIAEQ SLGQILQRHD AIPHIPGPST 540 LPVTTQLQKV ASSFHSNSHA QQSNFPVQQN RQEQFVVPQA SANNTPSTQG QPVAPNMGHG 600 QHGYGLEPQA LPNPSAHNGH NFSVASQVPQ NLPTTVLQAT VDIPRLSQDS SSQSIRNMQN 660 FQPPNMQNQP LQGLPLVPTS SSTDVAGVPV SHNAAKSEEV SRVTASLAQY FGNTAFGTGT 720 VGLQSSQPNV NSSLMATSSA APPAVQPNQW PWAQQQTGIV QPGLAVPSEQ QQQAPQTFQM 780 PIALGISNGN SMHLPHGGAP SGPAAAASVV NETVPPESKK GENKDSDAEA HEDGDNKKSK 840 DSKTLKMFKV ALADFVKEAL KPTWKEGQMS REVHKTIVKK VVDKVTSTVE NTPPTKEKIE 900 IYMSYSKEKL NKLVQAYVGK YAKA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 161 | 171 | RSRNRSRSRSR |
2 | 163 | 171 | RNRSRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.6G072400.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972916.1 | 0.0 | zinc finger CCCH domain-containing protein 55 | ||||
Swissprot | Q6YYC0 | 0.0 | C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | K3YG53 | 0.0 | K3YG53_SETIT; Uncharacterized protein | ||||
STRING | Si013221m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7766 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.6G072400.1.p |
Publications ? help Back to Top | |||
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