PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.6G062200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 143aa    MW: 16006 Da    PI: 5.1661
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.6G062200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.11.7e-10911910128
                 NAM  10 tdeelvveyLkkkvegkkleleev.ikev.diykvePwdLpkkvka.eek...ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                         td elv+   ++++   + + + + +++v  i++++P+dL  k+ + + +    +yfF ++             t +  Wk    +++vl+
  Sevir.6G062200.1.p   9 TDAELVDALARRRLGLPPQPSQPFtVHDVvVIFNSDPSDLYDKYGGgGATssgGVYFFRNQF------------TCDDGWKVAAGTQPVLD 87 
                         899***77666666666655544446666599********8443332222233779996543............34445**99999***** PP

                 NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           g+ vg+k+tLvf++gr     +t+W m+e+++
  Sevir.6G062200.1.p  88 GVGAIVGTKDTLVFHEGRWLP--RTRWAMDEFKA 119
                         999************999877..9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.2871140IPR003441NAC domain
SuperFamilySSF1019415.49E-149126IPR003441NAC domain
PfamPF023656.2E-69118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MCAMQQPATD AELVDALARR RLGLPPQPSQ PFTVHDVVVI FNSDPSDLYD KYGGGGATSS  60
GGVYFFRNQF TCDDGWKVAA GTQPVLDGVG AIVGTKDTLV FHEGRWLPRT RWAMDEFKAE  120
YQMGFDYSDY WLRLYRLRRL EG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.6G062200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683066.11e-102uncharacterized protein LOC111257559
TrEMBLA0A368RIM41e-101A0A368RIM4_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3217433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.18e-07NAC domain containing protein 53