PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G050500.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C3H

Protein Properties

Length: 365aa MW: 38209.1 Da PI: 7.4973

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G050500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31	4.3e-10	101	126	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ Sevir.6G050500.1.p 101 FKTKLCCKFRA-GTCPYVTNCNFAHGM 126 69*******.***********95 PP
2	zf-CCCH	18.1	4.6e-06	179	204	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ Sevir.6G050500.1.p 179 YKGRHCKKFYTEEGCPYGDACTFLHD 204 78888********************7 PP
3	zf-CCCH	43.4	5.8e-14	243	268	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Sevir.6G050500.1.p 243 WKTRICNKWEMTGYCPFGSKCHFAHG 268 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.0E-14	98	133	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.79E-8	98	131	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.028	100	127	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0014	100	126	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-7	101	126	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-8	178	206	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.629	178	206	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.53E-7	178	206	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.3	178	205	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-17	238	272	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.84E-10	239	273	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.1E-9	242	269	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.422	242	270	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.6E-11	243	268	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDYTNAIHII PDAAGPDAWT NAAPSAAGGD SAIWATEDDY RQWSADPGYG DRNPSSRAGS 60 EQPPPGKKAR GGGGAGGGAG GGDGGGGSST SKSRAIGKMF FKTKLCCKFR AGTCPYVTNC 120 NFAHGMEELR KPPPNWQEIV AAHEEATEQR EEHQIPIMTS GSVVAGDGGG AGSQGGRAYK 180 GRHCKKFYTE EGCPYGDACT FLHDEQSKAR ESVAISLSPT VGGGGYNAAA AANGAMVQKP 240 SNWKTRICNK WEMTGYCPFG SKCHFAHGAA ELHKYGGGLV DIDGRDVAST PDSKQAGASA 300 KAPADSAAAS TAIPPHADVY HLGIQSQRST NLNQRSGQVQ RPIQKWKGPD KISRIYGDWI 360 DENE*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDYTNAIHII PDAAGPDAWT NAAPSAAGGD SAIWATEDDY RQWSADPGYG DRNPSSRAGS  60
EQPPPGKKAR GGGGAGGGAG GGDGGGGSST SKSRAIGKMF FKTKLCCKFR AGTCPYVTNC  120
NFAHGMEELR KPPPNWQEIV AAHEEATEQR EEHQIPIMTS GSVVAGDGGG AGSQGGRAYK  180
GRHCKKFYTE EGCPYGDACT FLHDEQSKAR ESVAISLSPT VGGGGYNAAA AANGAMVQKP  240
SNWKTRICNK WEMTGYCPFG SKCHFAHGAA ELHKYGGGLV DIDGRDVAST PDSKQAGASA  300
KAPADSAAAS TAIPPHADVY HLGIQSQRST NLNQRSGQVQ RPIQKWKGPD KISRIYGDWI  360
DENE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G050500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972781.1	0.0	zinc finger CCCH domain-containing protein 56
Swissprot	Q84UQ3	0.0	C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBL	K3YIA0	0.0	K3YIA0_SETIT; Uncharacterized protein
STRING	Si013969m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6615	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-110	C3H family protein

Link Out ? help Back to Top
Phytozome	Sevir.6G050500.1.p