PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.6G046900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 845aa MW: 95609.7 Da PI: 7.7605

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.6G046900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.4e-27	85	174	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s+ksk +++i++ +fvCs+eg+++e++ + +k+r++ a+ r gC+a+l+v ++ d+kw+vtkl++eHnHe+ Sevir.6G046900.1.p 85 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSREGFSKEKRAAtaGKKTRKRPASIREGCNAMLEVLRRGDSKWVVTKLVKEHNHEV 174 9**************************************999886667778888999***************************95 PP
2	FAR1	57.3	5.3e-18	208	298	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF+ r+++s+ks ++++ ++ ++vCs++ +++ +++ ++k+ r +r gC+a +++ ++ +++w v+kl leH+Hel+ Sevir.6G046900.1.p 208 FYYSYASRAGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRENIgeDTKRVRALDPSRDGCDALFEIIRKGKDVWTVSKLILEHTHELN 297 9*****************9.6777********999988774466666777889****************************97 PP FAR1 91 p 91 p Sevir.6G046900.1.p 298 P 298 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-24	85	174	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.5E-15	208	298	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-19	399	490	IPR018289	MULE transposase domain
Pfam	PF04434	3.5E-4	666	711	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.681	678	714	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.0E-4	689	716	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MMEPQVVDLE DDSINFWASL GVSPHVDQMP LHNVHIVDHQ AQPPPAAAAA QPQSVCRDLF 60 PVESDACLEP RLGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES IIMLRFVCSR 120 EGFSKEKRAA TAGKKTRKRP ASIREGCNAM LEVLRRGDSK WVVTKLVKEH NHEVGLPSRV 180 HYIAIEGDAV VDPYLGMEFE SLESAKTFYY SYASRAGFEA RVRQSRKSQD ESLKMLKLVC 240 SRHRYHSGRE NIGEDTKRVR ALDPSRDGCD ALFEIIRKGK DVWTVSKLIL EHTHELNPAP 300 ASRVHCVRSQ GEVLVIANNF ADTRNLLLKG RDSQQPREMR YNDLGPEDAQ SLFEYLKKRQ 360 DEDPSFFYAV QHGKNGQSAN IFWADAKARM AYYHFGDAVR FETAYRKNKE TIPIVIFLGV 420 NHHVQPVVFG CALLLDESEA SFTWLFEKWI EAMHMGPPIS LVTELNREMT AAIAKVLPHT 480 HHIFCGKHIL DTVKEELHGT FPDLEPFITD LRKCIDGSRI EELFESGWSS VITKHGLSNN 540 ELLQSLYDIR QQWAPSYTKK VFYPGNQMPT TCENIEKVIE KYFSSKTELR VAVWQLGEAI 600 SSSFEAEVQA DYFTIFQMPP LSTASPLEKQ GSSIFTSTIF GIFQGQFAES FGYHAERLED 660 ETVHKYRVTR YEGDEEIHTV SFSPDQSTVN CSCCLFESCG MLCRHALRIF IIQGVRALPK 720 AYILKRWTKH AKNIITSDNY VDLRGDREDP STARFNDLCC DAVKCAKEGS KSAEIYAVAK 780 DALHKAFDEV VRSSKNFRGQ QNLQSCTTSI KRPIKKFGKA KDSSGKSLKR SASKSPLMES 840 DDIR*

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MMEPQVVDLE DDSINFWASL GVSPHVDQMP LHNVHIVDHQ AQPPPAAAAA QPQSVCRDLF  60
PVESDACLEP RLGMEFESGE AAKTFYIAYA GRVGFSVRIA RSRKSKCSES IIMLRFVCSR  120
EGFSKEKRAA TAGKKTRKRP ASIREGCNAM LEVLRRGDSK WVVTKLVKEH NHEVGLPSRV  180
HYIAIEGDAV VDPYLGMEFE SLESAKTFYY SYASRAGFEA RVRQSRKSQD ESLKMLKLVC  240
SRHRYHSGRE NIGEDTKRVR ALDPSRDGCD ALFEIIRKGK DVWTVSKLIL EHTHELNPAP  300
ASRVHCVRSQ GEVLVIANNF ADTRNLLLKG RDSQQPREMR YNDLGPEDAQ SLFEYLKKRQ  360
DEDPSFFYAV QHGKNGQSAN IFWADAKARM AYYHFGDAVR FETAYRKNKE TIPIVIFLGV  420
NHHVQPVVFG CALLLDESEA SFTWLFEKWI EAMHMGPPIS LVTELNREMT AAIAKVLPHT  480
HHIFCGKHIL DTVKEELHGT FPDLEPFITD LRKCIDGSRI EELFESGWSS VITKHGLSNN  540
ELLQSLYDIR QQWAPSYTKK VFYPGNQMPT TCENIEKVIE KYFSSKTELR VAVWQLGEAI  600
SSSFEAEVQA DYFTIFQMPP LSTASPLEKQ GSSIFTSTIF GIFQGQFAES FGYHAERLED  660
ETVHKYRVTR YEGDEEIHTV SFSPDQSTVN CSCCLFESCG MLCRHALRIF IIQGVRALPK  720
AYILKRWTKH AKNIITSDNY VDLRGDREDP STARFNDLCC DAVKCAKEGS KSAEIYAVAK  780
DALHKAFDEV VRSSKNFRGQ QNLQSCTTSI KRPIKKFGKA KDSSGKSLKR SASKSPLMES  840
DDIR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.6G046900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972752.1	0.0	protein FAR1-RELATED SEQUENCE 9
TrEMBL	A0A368RI56	0.0	A0A368RI56_SETIT; Uncharacterized protein
STRING	Pavir.Fb00442.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-121	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Sevir.6G046900.1.p