PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G433700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 426aa MW: 46052 Da PI: 8.7479 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.7 | 1.3e-10 | 69 | 95 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H+p Sevir.5G433700.1.p 69 PGEPDCTYYLRTGLCRFGMSCRFNHPP 95 5789*********************97 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 116 | 140 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Sevir.5G433700.1.p 116 QPECQYYLKTGTCKFGPTCKFHHPR 140 799********************96 PP | |||||||
3 | zf-CCCH | 31.6 | 2.8e-10 | 162 | 186 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+Cky ++CkF+H++ Sevir.5G433700.1.p 162 EKECAYYLKTGQCKYANTCKFHHPE 186 679********************96 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 313 | 338 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG Ck+G+ CkF+H++ Sevir.5G433700.1.p 313 DQPECQYYMKTGDCKFGAVCKFHHPR 338 689*********************96 PP | |||||||
5 | zf-CCCH | 42.6 | 1e-13 | 358 | 384 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G++CkF H++ Sevir.5G433700.1.p 358 PGEELCKFYSRYGICKFGANCKFDHPM 384 689**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.971 | 68 | 96 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.0E-5 | 68 | 95 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-8 | 70 | 95 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 73 | 96 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 74 | 94 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.694 | 113 | 141 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-6 | 113 | 140 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-10 | 116 | 140 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 117 | 142 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-5 | 119 | 141 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 159 | 187 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-4 | 159 | 186 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.18E-5 | 159 | 186 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-7 | 162 | 186 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 165 | 185 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9E-5 | 311 | 338 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.023 | 311 | 339 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 313 | 338 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-5 | 314 | 338 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 317 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.7E-8 | 357 | 384 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 357 | 385 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-6 | 358 | 384 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.4E-11 | 359 | 384 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 361 | 382 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MDDAGRASAP AAVTVSATSA PALPPPSATT AAADTSSPDP SALYGEGMWQ QMAMNSGATM 60 QPGPYPERPG EPDCTYYLRT GLCRFGMSCR FNHPPDRNLA IASARMKGEY PERVGQPECQ 120 YYLKTGTCKF GPTCKFHHPR EKAGIAGRVQ LNTLGYPLRP NEKECAYYLK TGQCKYANTC 180 KFHHPELFNA VPSSRGSPIY PSVHSSASAG PQSYTGTMAS WAFPRASYIP SPRWQSPSNY 240 APMIVPQGLV QVPSWNSYPG QLQSPGAQQT YGTSQQGEPS AGNQGMLSPY RSSSFPVPQY 300 ALQRENVFPE RPDQPECQYY MKTGDCKFGA VCKFHHPRVR SLPPPDCVLS PMGLPIRPGE 360 ELCKFYSRYG ICKFGANCKF DHPMTAPMGV YAYGFSASAS PASASTNVPM ARRLLGSPSG 420 SGYAS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G433700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036907 | 0.0 | BT036907.1 Zea mays full-length cDNA clone ZM_BFb0146O18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004971057.1 | 0.0 | zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q5JLB5 | 0.0 | C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | K3XI36 | 0.0 | K3XI36_SETIT; Uncharacterized protein | ||||
STRING | Si001558m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-148 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G433700.1.p |
Publications ? help Back to Top | |||
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