PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G429500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 705aa    MW: 74405.4 Da    PI: 6.4706
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G429500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.21.7e-19533629295
                         EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         +kvl++sdv+++gr+vlpkk ae h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ eFv++n+L+egDf+v++  ++
  Sevir.5G429500.1.p 533 QKVLKQSDVGSLGRIVLPKKEAEVHlpELKTRDGISIPMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGEFVRSNELQEGDFIVIY--SD 620
                         79*************************999***********7778*******99777777777777.********************..55 PP

                         .SEE..EEE CS
                  B3  88 .sefelvvk 95 
                          ++++++++
  Sevir.5G429500.1.p 621 vKSGKYLIR 629
                         588877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-27523638IPR015300DNA-binding pseudobarrel domain
CDDcd100151.01E-31530631No hitNo description
SuperFamilySSF1019363.14E-22531627IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.532532634IPR003340B3 DNA binding domain
SMARTSM010191.3E-18532634IPR003340B3 DNA binding domain
PfamPF023626.2E-16533628IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MDASAGSPPP HSQENPPEHG GDLGEAPAEE IGGEAGDDFL FAEDTFPSLP DFPCLSSPSS  60
STFSSSSSSN SSSAYTNAAG GAGGGADGAA GERSGPASAG EGFDALDDID QLLDFASLSM  120
PWDSEPTFPE VSMMLEDAMF APPHPVGDGR REGKAVLEGT GGEEACMDAA AAPGEDLPRF  180
FMEWLTSNRE NISAEDLRSI RLRRSTIEAA AARLGGGRHG TMQLLKLILT WVQNHHLQRK  240
RPRDAMEEAA VLHGHGQSQL SSPGVNTGYE FPAGGQDMAA GSGASWMPYQ QPFTPPAYGG  300
DAVYPGAAGQ YPFHQSSSTS SVVVSSQPFS PPAVGDMHAA GGGNMAWPQQ YVPFPGASAG  360
SYPMPPVVAQ PFSPGFGGQY GGAAHPMGPQ RMAGGEASAT KEARKKRMAR QRRLSCLQQQ  420
RSQQLNLAQI QVPVHPQEPS PRSVHSAPVT PSGGGWGFWS PGSQQQVQNP LSKSNSSRAP  480
MQQVPRSPEA PAEGAPPVNP APGARQEESP QRSTASDKRQ GAKSDKNLRY LLQKVLKQSD  540
VGSLGRIVLP KKEAEVHLPE LKTRDGISIP MEDIGTSRVW NMRYRFWPNN KSRMYLLENT  600
GEFVRSNELQ EGDFIVIYSD VKSGKYLIRG VKVRPAHQDQ GNGSSAVGKN KHGSPGPEKA  660
GGSSDDGIVI ADGTNKPDGA CKGRSQQGAR RARHQGAASM AVSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-365286321105B3 domain-containing transcription factor FUS3
6j9b_D2e-365286321105B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G429500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0609940.0BT060994.1 Zea mays full-length cDNA clone ZM_BFb0082K18 mRNA, complete cds.
GenBankJX4699910.0JX469991.1 Zea mays subsp. mays clone UT3351 ABI3VP1-type transcription factor mRNA, partial cds.
GenBankMZEREGPRO0.0M60214.1 Zea mays viviparous-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971015.10.0regulatory protein viviparous-1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLK3XF300.0K3XF30_SETIT; Uncharacterized protein
STRINGSi000497m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-64B3 family protein
Publications ? help Back to Top
  1. Williamson JD,Scandalios JG
    Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6
    [PMID:1388272]
  2. Hoecker U,Vasil IK,McCarty DR
    Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize.
    Genes Dev., 1995. 9(20): p. 2459-69
    [PMID:7590227]