PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G398200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 326aa MW: 34438.3 Da PI: 4.6032 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.8 | 1e-37 | 32 | 88 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Sevir.5G398200.1.p 32 APNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 88 568***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-37 | 15 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.6E-32 | 32 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 33 | 87 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 35 | 71 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MLSSHHEAML PYAPRPPSLL VDRRYKQGGE TAPNCPRCDS PNTKFCYYNN YSLSQPRYFC 60 KGCRRYWTKG GSLRNVPVGG GCRKNRRGKS SARSAAESMA SGRDAAAFGH RFPGPVRPDL 120 VLEGMVGNPA NPGQAIPDMP AAADGSTIDL AMLYAKFLNH PAAEAGAGAV TPESAGQVDE 180 AFDTFSASSD LSPGVLAPAQ FDPCHDGFGE WLGPVSSTDP TSTAASTSSA TTMLCSDVSV 240 QAALGELNFA MDQSCFDSLG LPTDVGNLSS WCSIVPSLST LEDTKYDSLD SFPDDALSLH 300 EGMISGPDNH DWSVDCQGLE ALYMP* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G398200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582408 | 0.0 | KC582408.1 Sorghum bicolor dof11 protein (dof11) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682290.1 | 0.0 | uncharacterized protein LOC101752604 | ||||
TrEMBL | K3XK07 | 0.0 | K3XK07_SETIT; Uncharacterized protein | ||||
STRING | Si002230m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 4e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G398200.1.p |