PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G394300.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 383aa    MW: 42100.1 Da    PI: 6.321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G394300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05221240120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         + C+ C+k+F+r  n++ H+
  Sevir.5G394300.2.p 221 FICHVCNKTFNRYNNMQMHM 240
                         89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.83E-5217244No hitNo description
PROSITE profilePS5015710.201221248IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5221240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SuperFamilySSF576678.96E-5289325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGIRACAVEG APFFQWLKPR CSSPSPSRSS SDSSSSASMA SGHRVGVLGE EGQDGGGGVQ  60
EVSSMTCLPL LSRLGEGKVA DDDDNEQRPV KEEIVMSSGA RSDLAQSGVD LNIGLPVGGS  120
CIEDAVMEEK DDEEEEDNEV EREEEEDDDE GEEWKHPHGD CKVEGVDQLE GIIGEVVASV  180
EGSNASSFGE FGVVGAESGL PIGCRYWIPT PAQILIGPVQ FICHVCNKTF NRYNNMQMHM  240
WGHGREYRKG PESLKGTQTL AMLKLPCYCC APGCKNNVSH PRARPLKDFR TLQTHYKRKH  300
GAKPFCCRRC AKPFAVKGDW RTHEKNCGKR WFCACGSDFK HKRSLNDHVR SFGADHRPVD  360
DDAAAPAPKD HRIIRFHHHH AR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G394300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643340.0AK064334.1 Oryza sativa Japonica Group cDNA clone:002-107-G07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819090.10.0protein TRANSPARENT TESTA 1-like
TrEMBLA0A1E5UZU80.0A0A1E5UZU8_9POAL; Zinc finger protein WIP5
STRINGPavir.Ea03764.1.p1e-178(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.18e-93WIP domain protein 5