PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G390500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 32438.6 Da PI: 6.6298 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4.1e-10 | 39 | 85 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+eE +l+ +a ++ + W+++a++++ ++t +++++++++ Sevir.5G390500.1.p 39 EWTAEENKLFEEALARIDRNapdKWERVAAMLP-RKTVVDVVNHYHDL 85 7*****************99*************.***********976 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 6.7e-15 | 144 | 188 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r+ ++Rt+ q+ s+ qky Sevir.5G390500.1.p 144 PWTEEEHKLFLMGLKKYGRGDWRNISRKYVTTRTPTQVASHAQKY 188 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.01E-10 | 34 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 8.037 | 35 | 88 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-7 | 36 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-8 | 39 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-5 | 39 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-7 | 39 | 85 | No hit | No description |
PROSITE profile | PS51294 | 17.299 | 136 | 193 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.36E-17 | 139 | 193 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.4E-17 | 140 | 191 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.5E-12 | 141 | 191 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 142 | 187 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-12 | 144 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-11 | 144 | 189 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MMAEAWTQVL LPSTAPCFSG QPSCFWQDRL ADFGGIGDEW TAEENKLFEE ALARIDRNAP 60 DKWERVAAML PRKTVVDVVN HYHDLEYDVG FIEAGLVPFP HYSSSPPSSG FTLEDWDGGD 120 GGFRRGYCLK RARGPDQERK KGIPWTEEEH KLFLMGLKKY GRGDWRNISR KYVTTRTPTQ 180 VASHAQKYFI RLNSGGKDKR RSSIHDITTI NLPDEDRGNA SPSPPSAATA ATNPSVADQF 240 AALVDAKPFM APLPGALGVA HPYGNVKLEP KSALVAGLGF DDSILVQMQC AAQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-14 | 30 | 105 | 1 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G390500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034900 | 0.0 | BT034900.1 Zea mays full-length cDNA clone ZM_BFb0026O20 mRNA, complete cds. | |||
GenBank | KJ727529 | 0.0 | KJ727529.1 Zea mays clone pUT5389 MYB transcription factor (MYB34) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970612.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 8e-76 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | K3XKK0 | 0.0 | K3XKK0_SETIT; Uncharacterized protein | ||||
STRING | Si002423m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 3e-75 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G390500.1.p |
Publications ? help Back to Top | |||
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