PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G367400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 299aa    MW: 31861.6 Da    PI: 6.7817
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G367400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.32.6e-22112171359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg+ WrKYGqKe++g ++pr YYrC+++   gC+++++v+r+++ p + ei Y geH+++
  Sevir.5G367400.1.p 112 DGFIWRKYGQKEINGHKHPRLYYRCAHKqqqGCNATRRVQRTRDHPAAYEIAYYGEHTCR 171
                         9*************************998889*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-23102171IPR003657WRKY domain
SuperFamilySSF1182908.11E-22106171IPR003657WRKY domain
SMARTSM007743.9E-30110172IPR003657WRKY domain
PfamPF031061.3E-23112171IPR003657WRKY domain
PROSITE profilePS5081119.738112168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTMDTPAAVV LELMTMGQQS AAHLGDLLRT ASPAASPHQE LAAEILRCCG RVIDALRATA  60
SGRKRKAPEY HQEVAPPAAG AYWSPPPPGP PPKRRARGAE AVKEVTSGTT VDGFIWRKYG  120
QKEINGHKHP RLYYRCAHKQ QQGCNATRRV QRTRDHPAAY EIAYYGEHTC RGAAAAACHL  180
QGGAPPPAVV DFGSTSWGSA DASTGGSPAA SMSQSQGGWS PPPSVSPSPS SEVGFEFEAQ  240
TNEWHDMATV DQLICATTPC YASDPVMEFL DGSLGWESVL LNDPLDFAGL HHIATTFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-211121711069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G367400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970388.10.0probable WRKY transcription factor 38
TrEMBLK3XKH80.0K3XKH8_SETIT; Uncharacterized protein
STRINGSi002401m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.22e-20WRKY DNA-binding protein 67