PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G336900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 334aa    MW: 35162.6 Da    PI: 4.9691
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G336900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM867.3e-27141481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 
                         lppGfrF Ptdee+vv+yL +++++++l++   i + d +++ Pw L +k ++++ + +fF++ +  + +g+r++r  +  g+W+ +g+ k
  Sevir.5G336900.1.p  14 LPPGFRFVPTDEEVVVHYLLRRIQNQPLPV-GDILDDDPLSAPPWLLLAK-HGRKGDAFFFAEGQAMKGKGSRQKRsCAGGGTWEGQGQRK 102
                         79****************************.568999**********743.3445589******************88889********99 PP

                 NAM  91 evlskkgel..........vglkktLvfykgrapkgektdWvmheyrl 128
                         + + ++ge+           + k  L f  g+  kg +t Wvmhey++
  Sevir.5G336900.1.p 103 AAKGREGEKlrvrvdgeeiEWRKYALNFQ-GEVIKG-STGWVMHEYSI 148
                         99998444444555555536667778876.999887.9********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-319167IPR003441NAC domain
PROSITE profilePS5100530.47114167IPR003441NAC domain
PfamPF023651.8E-1915148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEAAAASTAS KLGLPPGFRF VPTDEEVVVH YLLRRIQNQP LPVGDILDDD PLSAPPWLLL  60
AKHGRKGDAF FFAEGQAMKG KGSRQKRSCA GGGTWEGQGQ RKAAKGREGE KLRVRVDGEE  120
IEWRKYALNF QGEVIKGSTG WVMHEYSITA PPELAASPVR VYRIRFSGHG KNAQKRKRNE  180
IDWASDEEEE VYQGAARAAA RPAVAEPDAL FVGGCPSAPQ PEPVSYLPVP VVAGSDALFV  240
GGCPSAPQLG PVSYLPMAPV YVGNGNLAEW TGTGAGGALS AATSSLAQDL PALVDGGGED  300
WNFIFSSDDL LPGFEFSGAA DAGAMSAPMV PAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-151015113145NO APICAL MERISTEM PROTEIN
1ut4_B5e-151015113145NO APICAL MERISTEM PROTEIN
1ut7_A5e-151015113145NO APICAL MERISTEM PROTEIN
1ut7_B5e-151015113145NO APICAL MERISTEM PROTEIN
4dul_A5e-151015113145NAC domain-containing protein 19
4dul_B5e-151015113145NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G336900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972189.10.0NAC transcription factor 47
TrEMBLA0A368RBI30.0A0A368RBI3_SETIT; Uncharacterized protein
STRINGSi004801m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-19NAC domain containing protein 47