PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G322200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 306aa    MW: 33549.8 Da    PI: 4.5565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G322200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-3093151259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnhe
  Sevir.5G322200.1.p  93 SDSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYTFEHNHE 151
                         69*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-3190153IPR003657WRKY domain
SuperFamilySSF1182905.36E-2691153IPR003657WRKY domain
SMARTSM007749.1E-3792152IPR003657WRKY domain
PROSITE profilePS5081131.84693153IPR003657WRKY domain
PfamPF031064.3E-2694151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSSAEDGYCS SDSPRAESPE ESQAAAAADA ESPRANKRER DLRDLHDLPA SPSSPLPAAK  60
RSRRSVEKRV VSVPLAECGD RPRAGSGEGP PPSDSWTWRK YGQKPIKGSP YPRGYYRCSS  120
SKGCPARKQV ERSRADPTVL LVTYTFEHNH ESPQPKSSSC HQQGKPSPRP PAPKPEPVVE  180
QAELGPEHEL PEPEAPEQEQ EQELEPEAEQ EEQKVVVSLV APETASTATV SPVAEEDESF  240
DFGWFDQYPT WHRSAAYAPL LPPEEWEREL QGEDALFAGL GELPECAVVF GRRRELSLEA  300
TAPCS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-1968153679Disease resistance protein RRS1
5w3x_D1e-1968153679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G322200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586170.0KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969956.10.0probable WRKY transcription factor 65
TrEMBLK3XKE10.0K3XKE1_SETIT; Uncharacterized protein
STRINGSi002364m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.16e-36WRKY DNA-binding protein 65