PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G321500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 449aa    MW: 49923 Da    PI: 5.0865
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G321500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.32.8e-34141042101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+ye+++d++++ ++ w+  g+sfvv ++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F +g+++
  Sevir.5G321500.1.p  14 FLSKTYEMVDDPATDAVVAWTPPGTSFVVANQAEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEDFIRGQRH 95 
                         9***************************************************************9998.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                          l++i+r+k
  Sevir.5G321500.1.p  96 RLKNIHRRK 104
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEAGGGSASS LPPFLSKTYE MVDDPATDAV VAWTPPGTSF VVANQAEFCR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKVDPE QWEFANEDFI RGQRHRLKNI HRRKPIFSHS SHPQGSGPLA  120
DNERREYEDE IEKLKRDNDA LTLELEKNAQ KKIDMERRMQ ELEDKLIYLE DRQKNLIAYV  180
RDIVQAPGFR SSFVQQPDHH GKKRRLPVPI SLHQDANAEG NQIVHGGLTN PPVCIESFDK  240
MESSLNSLEN FFREASEAFD ISYDGVPGPS SAVVITELHS SGESDPHVPS PPSRMHTSSA  300
GAGDSPSRMH TSSAGAGDSL SSHDVTESTS CAESPPLPQM MSFTDSRAKV SEIDVNLEPA  360
ITETGPSRDQ AAEDSPHPAP GANDGFWEQF LTEQPGSNTH QEAQSERRDG DNKGDQVRIG  420
DRENLWWGKK NVEQMTEKLG HLTSAEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-28410319129Heat shock factor protein 1
5d5v_B4e-28410319129Heat shock factor protein 1
5d5v_D4e-28410319129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G321500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4924600.0EU492460.1 Pennisetum glaucum heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969950.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLK3XHR70.0K3XHR7_SETIT; Uncharacterized protein
STRINGSi001439m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-79heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]