PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G292800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 288aa    MW: 31397.9 Da    PI: 10.3081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G292800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-12556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT+eE+e l ++v ++G g W+tI +          R+  ++k++w+++
  Sevir.5G292800.1.p  5 KQKWTQEEEEALRRGVLKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                        79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8160IPR017930Myb domain
SuperFamilySSF466898.96E-15258IPR009057Homeodomain-like
SMARTSM007172.8E-8459IPR001005SANT/Myb domain
PfamPF002498.9E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-14556IPR009057Homeodomain-like
CDDcd116605.67E-20656No hitNo description
SMARTSM005262.4E-15110175IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.7E-13110175IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.409112181IPR005818Linker histone H1/H5, domain H15
PfamPF005383.3E-9114173IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF466898.96E-15114149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGAPKQKWTQ EEEEALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSRDKMR VPKISGPSSS PASSSQAQLL PVANKVAEAS QDAEKKPQDG KTPPKYGAMI  120
LEALSELNEP NGSEISAIFG FIEQRHEVQP TFRRLLSSKL RRLAESKKIE KVDNKLYRLV  180
DSSATRTLAP IKASAPKQKD LSKPSKVSKN LGLFVATSPA LEAAMAAAAK VADAEAKAHD  240
AHDQMMEVER ILKMAEETES LLTVAAIAYD RCSRGEITTL NPAPRKL*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G292800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969705.10.0single myb histone 4
SwissprotQ6WLH41e-144SMH3_MAIZE; Single myb histone 3
TrEMBLK3XKP40.0K3XKP4_SETIT; Uncharacterized protein
STRINGSi002467m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-48MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]