PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G256900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 583aa    MW: 59930.7 Da    PI: 6.4625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G256900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05159180223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         +Cp Cgk Fs++     H+++H
  Sevir.5G256900.1.p 159 PCPVCGKEFSSQKAVCGHMKVH 180
                         6*******************98 PP
2zf-C2H210.80.0015455477123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cg +F+   +L  H+r+H
  Sevir.5G256900.1.p 455 HACKVCGVVFPAGVQLGGHMRKH 477
                         67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575129No hitNo description
PROSITE profilePS501579.827158180IPR007087Zinc finger, C2H2
SMARTSM003558.8E-4158180IPR015880Zinc finger, C2H2-like
PfamPF138944.1E-4159180No hitNo description
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-7403477No hitNo description
SMARTSM003550.74403425IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-4403426IPR007087Zinc finger, C2H2
PROSITE profilePS501578.871403430IPR007087Zinc finger, C2H2
PROSITE patternPS000280405425IPR007087Zinc finger, C2H2
PfamPF139127.6E-7454479IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785455482IPR007087Zinc finger, C2H2
SMARTSM003550.17455477IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280457477IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MQLARAVPNS QVEHQQLALS SSLGLLGSCS DSHQASRALA RARTTAMAGS SEERLRRPTS  60
RFHADLHDDE PEEGEVVPGY HSDVDTEEYY NRHSYSSDSD ETVSDSNAAC SVPENYDDAT  120
SPYPVAAKYG SAGASSVAAN NNNGGNASSS SVAAPVMLPC PVCGKEFSSQ KAVCGHMKVH  180
QHGVGRQDQG IGKVRGIKRD VVPVVGRWGG NGKRGCLGLG GRAATPNAES DQSMAIVVAE  240
PQIVFQPMPL AFAAPNLSSV SIASASPNPS SVPTASAMAT PNPSSSSMAS TSPNLSPVPL  300
ASSMTNVSDQ SMTNVSDQSS SAQPMNNDAM DTVVAGADNP RSDVDAHAAT PSTPPAAGEQ  360
APSVHQQPMA PPSPPAAVER APPAHQPPIV PRPAAGRQNP NGYTCNECDA WFRTHQGLGG  420
HRAGHKNREL VAVAAEMLGD GAVPGRRNAK PEKTHACKVC GVVFPAGVQL GGHMRKHYAG  480
PPIVPNKKPR LVIQPLLPPP ALTLVLPANA YADEASPAPA LEAAVQPGPA PAVERTPEPA  540
PGPAVVGRVL LFGIDIGVGV KKPAAHEDPS ATEGSASTDG EQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G256900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368R8G40.0A0A368R8G4_SETIT; Uncharacterized protein
STRINGSi004298m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.14e-13C2H2 family protein