PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G250700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 349aa    MW: 37598.4 Da    PI: 8.5459
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G250700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.41.5e-15273298126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +ktelC+ + +tG C+yGd+C+FaHg
  Sevir.5G250700.1.p 273 FKTELCNKWEETGACPYGDQCQFAHG 298
                         79***********************9 PP
2zf-CCCH17.57.4e-06311336126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt  Cr  +++  C+yG rC+F H+
  Sevir.5G250700.1.p 311 YKTQVCRMVLAGEVCPYGHRCHFRHS 336
                         99*********66**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.2E-19267305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-10269304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601272300IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-10272299IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-12273298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-11306336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-8306338IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5310337IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.535310338IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MQEALLSPAN AGSLRSAFEL KPFAFGDQRL ASPRYLNLAC GGTGGDDALF RCSSPFSPSF  60
GFSSPSPLAT SSVSLSPSSS ASLVDDCDDA AATDAATGHR LQLARLALQY QEVADRYELC  120
LARLADAADE AAALRRENAE LRAANGDLTR RLALLSGIGK QAAAAAIADE VRRLRFSEQK  180
AVPAAKERAQ PEKLAVLPKS ISVRSNDYLK MNQPNQAPAT PAANNRKPRA SNPTKPSSQR  240
VYIGDGGDKK GEEAKQQHAA GAMELEVYNQ GMFKTELCNK WEETGACPYG DQCQFAHGVA  300
ELRPVIRHPR YKTQVCRMVL AGEVCPYGHR CHFRHSLTSA ERLLLPRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-22273336467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G250700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421470.0BT042147.1 Zea mays full-length cDNA clone ZM_BFb0146F09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969302.10.0zinc finger CCCH domain-containing protein 9 isoform X1
SwissprotA2ZVY51e-126C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLK3XJH70.0K3XJH7_SETIT; Uncharacterized protein
STRINGSi002050m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-51C3H family protein