PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G231400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family LSD
Protein Properties Length: 963aa    MW: 100692 Da    PI: 4.1044
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G231400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD120.48.8e-07871894124
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                         Cg Cr lL+YP GA +V+C  C t
  Sevir.5G231400.1.p 871 CGCCRQLLAYPKGAVHVQCFGCWT 894
                         9******************77755 PP
2zf-LSD142.51.1e-13909933125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg C+tlL+YP+GAp+V+C++C +V
  Sevir.5G231400.1.p 909 CGECDTLLMYPFGAPAVKCSNCLFV 933
                         **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012176.1E-102339No hitNo description
PRINTSPR012176.1E-104658No hitNo description
PRINTSPR012176.1E-106283No hitNo description
PRINTSPR012176.1E-108399No hitNo description
PRINTSPR012176.1E-10103120No hitNo description
PRINTSPR012176.1E-10135160No hitNo description
TIGRFAMsTIGR010531.5E-10868898IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-7871894IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.5E-7907934IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-10909933IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MAASPETAEP PETSDTHSSP HPPSSPRLHP TQENPSLTTA APPEMANPDQ FTPVPPPPAE  60
QSTVEHSEAE PLPPTPIDEA EPPPSHPPPP EAEPAASSAF EAIPTEKVAS PSPLPKDVAV  120
EVSHEVAASA PSPSPSPSPQ IVGASPEDAP QPPSPPRTPP ATTAHISTDP STTGATAMAS  180
QDQEEAARPS LAPETMDADS RTAPAPLTLP MESGPEGLLS QQKPRPPSPT LCENLEPAQP  240
SPQPCHPAES TDASLDAAVD EAVEGTLEKA AGSLPVPEVT NRDMDITTGM LPAWEIGSEE  300
MLSQQQLRPP CLEIAPLRGE NPKSVWPPQP PPPAESTYGW SNAATNEASA VASEEATVSL  360
EFGAERSLQE PVQTSKTSIL EAEPCSPEMA PPGFEDFKSQ WLPLSSPTLA ESTHNVVQVA  420
AINPVGMTPD AATESLPASE AMDMEINISP GLLPPLKSRA EVRSLQPPLG SCSPMMEAAP  480
CSPDMPPPGF ENCKSSWLPQ PTIPPLCETT YALPDVASTK AGTSVEKACS VLALEATDVE  540
TGTERWRLPQ LQSGTGGSLQ EPLPRSPSPT MQAAPCSLDT APPGFENMKA MHVTSKGAPQ  600
SSSASALEAM DLDMDAAPAV APSSESKAGK SLPPETPLVP SHVAQHTACS LRMAPSGSEN  660
VESAQQLLPP AAVLPPDETP DALADAGTKT VTMEQMRHPV SVTGATEEAN GSILPAALEN  720
GCDDPLPNLE PQASPAAVHA APTSPEIAPT SFENSESFQQ TSPCLAETID PSAHSSATMP  780
AIVKSNKTNL PLSPLQATDA DMESATRQQS PLKSEERSLP QPEQHPSSPS VKNTNCSPEV  840
APPGYENLDS SEQLPLPPPL SMKFEMGQMV CGCCRQLLAY PKGAVHVQCF GCWTINLVLE  900
EHQVGKVYCG ECDTLLMYPF GAPAVKCSNC LFVTEIGERN VRPRISTEQS VSPHPQEVVH  960
QS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G231400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969153.10.0proteoglycan 4
TrEMBLA0A368R7Q80.0A0A368R7Q8_SETIT; Uncharacterized protein
STRINGSi000307m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133952525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-29lsd one like 2