PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G134100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 380aa    MW: 40282 Da    PI: 7.2089
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G134100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.79.8e-09119139526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++f++ G Ck+Gd C FaHg
  Sevir.5G134100.1.p 119 ACPDFRK-GGCKRGDACEFAHG 139
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-5114140IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159115141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-6118141IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-7119139IPR000571Zinc finger, CCCH-type
SMARTSM0035612149172IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258149173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MMMMGEGVSV PPWSHHLPVS GGGGGGGGDE MTPYLLAALR QYLPYNDAGA AADDEEEAAA  60
AAMAAGVDGY GSDEFRMYEF KVRRCSRARS HDWTECPFAH PGEKARRRDP RKYHYSGTAC  120
PDFRKGGCKR GDACEFAHGV FECWLHPARY RTQPCKDGTA CRRRVCFFAH TPDQLRVLPP  180
QQSSPRGTAA AASPLAESYD GSPLRRQAFE SYLTKSIMSS SPTSTLMSPP KSPPSESPPL  240
SPDGAAAYRR GSWPGVGSPV NEVLASLRQL RLSKANSSPS GGWAGYPSSA VAYGSPTAAG  300
LYSLPSTPTT MGGGFMANLE PLDVSFGGGE EEPVQRVESG RALRAKVFEH LSREGAVSVE  360
PATGGIGGPD VGWVSDLIN*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G134100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817903.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2S3HYP50.0A0A2S3HYP5_9POAL; Uncharacterized protein
STRINGPavir.Eb00253.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-94C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]