PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G119900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 277aa    MW: 30043.6 Da    PI: 8.5721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G119900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-0793118127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ykt+lC  f + G C y d C+FaHg+
  Sevir.5G119900.1.p  93 YKTKLCEKFEA-GKCAYEDGCTFAHGE 118
                         9**********.*************96 PP
2zf-CCCH19.51.7e-06158180325
                         S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                          + C  f+  GtC+yGdrC++aH
  Sevir.5G119900.1.p 158 GKVCFEFRDRGTCHYGDRCTYAH 180
                         5678889999************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-1588124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-891122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0892119IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-492118IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-593118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272155183IPR000571Zinc finger, CCCH-type
SMARTSM003560.057155182IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6156182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-6159181IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4159180IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MERDEGKAAA AAAGAGARAS RWEVSPDGVI VLPAGSAAPR PPPPHARQQR ERETERERER  60
EREREREREQ QNNPGAGVFG EQPHPELPEK VFYKTKLCEK FEAGKCAYED GCTFAHGEAE  120
LRPPMPVPPA LVLHRRKTPP PPPPPPAAEA PFGGYYGGKV CFEFRDRGTC HYGDRCTYAH  180
ATAAEVAEMR YPGGPRSVEH ALRNAPPFAR ASFSPGGTAR SSSTTSSYAP AAAARAFPSA  240
LPPPAPVGED GRKLSRLEIL SRKKTRGIYG DWPEQD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15767RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G119900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971711.11e-127zinc finger CCCH domain-containing protein 1
TrEMBLK3XTC41e-125K3XTC4_SETIT; Uncharacterized protein
STRINGSi005180m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.17e-10C3H family protein