PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G099200.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18573.9 Da    PI: 9.8181
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G099200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.33.2e-261160251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        rie+   rqv fskRr+g+lKKA+ELS LCdaeva+iifs+ gkl+ey+s
  Sevir.5G099200.2.p 11 RIEDRVSRQVRFSKRRAGLLKKAFELSLLCDAEVALIIFSPAGKLHEYAS 60
                        8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.917262IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-33261IPR002100Transcription factor, MADS-box
CDDcd002652.32E-38479No hitNo description
PRINTSPR004043.5E-27424IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-29479IPR002100Transcription factor, MADS-box
PfamPF003192.6E-241158IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-273960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MPPRGRMELR RIEDRVSRQV RFSKRRAGLL KKAFELSLLC DAEVALIIFS PAGKLHEYAS  60
TSIEDTYNRY KQFSGAGKTE DGDRNINNNK DGASSDLQST LSEIATWSSK SNADDSDAND  120
LEKLENLLRN ALRDTRSRKV RDQSGTVFLM PSLSLSMLRE SKLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-19474373MEF2 CHIMERA
6byy_B5e-19474373MEF2 CHIMERA
6byy_C5e-19474373MEF2 CHIMERA
6byy_D5e-19474373MEF2 CHIMERA
6bz1_A6e-19474373MEF2 CHIMERA
6bz1_B6e-19474373MEF2 CHIMERA
6bz1_C6e-19474373MEF2 CHIMERA
6bz1_D6e-19474373MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G099200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848195e-74KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968191.17e-98MADS-box transcription factor 51 isoform X2
SwissprotQ9XJ612e-56MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A368R3562e-96A0A368R356_SETIT; Uncharacterized protein
STRINGPavir.J02739.1.p2e-66(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-29AGAMOUS-like 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]