PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G061400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 409aa    MW: 42809.9 Da    PI: 4.9638
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G061400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.65.7e-3187186297
              DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88 
                         lfqrlw++e e+++L+G++df+a++g+   +++ d+  fye +++++sf+++ksql+eK+rrLKkK++ + ++ a++g  ++f+++h+  i
  Sevir.5G061400.1.p  87 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYEEIRRRLSFDFTKSQLIEKLRRLKKKYRVCAARvAAQGAAFAFRSAHEGAI 177
                         79************************99877778*************************************998899************** PP

              DUF573  89 felskkiWg 97 
                         +++++ iW+
  Sevir.5G061400.1.p 178 YDVARHIWR 186
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-2788185IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MADDHHPLAA AASSSAGDDD EGTDTDASNS DLANHRDPPP LTDATSAPPP PPAAASSAPE  60
PTGAVPPPPP PPPQPQSAGA AEDSRRLFQR LWTDEEELLI LRGFLDFTAR RGTTFASHQY  120
DTGPFYEEIR RRLSFDFTKS QLIEKLRRLK KKYRVCAARV AAQGAAFAFR SAHEGAIYDV  180
ARHIWRPAFK RGEGAAAGDA SDEDDINPAA AAAAAALPNA TEDGGGGSAS APTPRGRGGR  240
RVRRRTAQEL EAPALPATSA LVLNDVVQEP LVVPVENLTP AFAPPHPVQA PIVSPMAATP  300
SPMTATAGGA TEEVVRTILS PLLREFISSV AVAGQAGLGL GLGMGFGGIG GFDILGLGFG  360
AAGPNPAMPG DEKWRQQQIL ELEVYLKRIE LVREQVTAAL QELRSSEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G061400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654061e-168BT065406.1 Zea mays full-length cDNA clone ZM_BFb0145O21 mRNA, complete cds.
GenBankJX4284571e-168JX428457.1 Zea mays subsp. mays clone pUT3052 GBP21 GeBP type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967868.10.0probable transcription factor At3g04930
TrEMBLK3XTC30.0K3XTC3_SETIT; Uncharacterized protein
STRINGSi005179m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-27DNA-binding storekeeper protein-related transcriptional regulator