PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G060800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 312aa MW: 34830.6 Da PI: 6.174 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.3 | 7.3e-50 | 18 | 150 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrF+P+dee++++yL +kv+++++++ +i evdi+k+ePw+L k+k + +++yfF k+d+ky++g+r+nratk+gyWkatgkdke Sevir.5G060800.1.p 18 LPPGFRFNPRDEEIITFYLMPKVHHRNFTC-IAIGEVDINKTEPWELLDKAKMKGEDLYFFYKKDRKYPSGSRANRATKAGYWKATGKDKE 107 79**************************99.88**************878888999*********************************** PP NAM 92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ + ++lvg+kktLvfy+grap+g ktdWvmhe+rle Sevir.5G060800.1.p 108 IHGAteseeLSQLVGMKKTLVFYTGRAPDGAKTDWVMHEFRLE 150 **98654444445***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-55 | 12 | 187 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.833 | 18 | 187 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-26 | 19 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MGDHQKQPQR MSDDILELPP GFRFNPRDEE IITFYLMPKV HHRNFTCIAI GEVDINKTEP 60 WELLDKAKMK GEDLYFFYKK DRKYPSGSRA NRATKAGYWK ATGKDKEIHG ATESEELSQL 120 VGMKKTLVFY TGRAPDGAKT DWVMHEFRLE GINRHLYPTS SSSTSTTTMK SSASRVDEWV 180 VCRVFHKATG IKREPTLPPN NLDIVDGGID QSSIPMPTPL QFPMLLDFMI DPIASYNSTT 240 SASSSSVPPM ACMGRVGLQM NNTLFGNPQE PSLMVSQKNT GMNNDQINIA EIGSVVSTNL 300 ESMDTMDMDG I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-45 | 16 | 193 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 16 | 193 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 16 | 193 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 16 | 193 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 16 | 193 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 16 | 193 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 16 | 193 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 16 | 193 | 18 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G060800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682349.1 | 1e-127 | protein CUP-SHAPED COTYLEDON 1 | ||||
TrEMBL | A0A368R272 | 1e-126 | A0A368R272_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb00839.1.p | 1e-134 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 2e-64 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G060800.1.p |