PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G060600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 184aa    MW: 19625.7 Da    PI: 6.9347
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G060600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-121221661155
                 AP2  11 krgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++g+W A+I    e +    k ++lg+f+t+eeAa+a++ a+ +l+g
  Sevir.5G060600.1.p 122 RDGKWQARIGRIGEsR--DtKDIYLGTFDTEEEAAEAYDIAAIELRG 166
                         48******99953323..36*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.568114174IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-16115176IPR016177DNA-binding domain
SMARTSM003804.6E-20116180IPR001471AP2/ERF domain
CDDcd000182.28E-18116176No hitNo description
Gene3DG3DSA:3.30.730.105.4E-15117174IPR001471AP2/ERF domain
PfamPF008472.6E-7122166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MATVQPQSPA GPAPSPPQEG RHDRRAGNKQ LAVGGGGGGE ERKMGGGASA GAGGGRKLVA  60
EAMHKYAASR FHGVTSVSCS RTGKISDYEK EIEIIKTMSQ DEFVAYIRRQ SSCFSRGTSS  120
YRDGKWQARI GRIGESRDTK DIYLGTFDTE EEAAEAYDIA AIELRGVHAV TNFDISNYCE  180
DGL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G060600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0355295e-62BT035529.1 Zea mays full-length cDNA clone ZM_BFb0068F10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977550.13e-77AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ6PQQ32e-32AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A368R1R55e-81A0A368R1R5_SETIT; Uncharacterized protein
STRINGSi004174m1e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78643548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.13e-24AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]