PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.4G289800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

DBB

Protein Properties

Length: 296aa MW: 30473.1 Da PI: 4.9994

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G289800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22	3.4e-07	4	46	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C+ ++ +++ C ++ lC C + H+ H+++p Sevir.4G289800.1.p 4 RCDVCGAEPAAVLCCADEAALCSACDRSVHRAnklahkHRRIP 46 8*****************************7799996666665 PP
2	zf-B_box	24.3	6.2e-08	61	101	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++ C+ ++e + fC +++ lC+dC + +H+ H Sevir.4G289800.1.p 61 APLCDVCKERRGLVFCVEDRAILCADCDDPIHSAndltakH 101 579*****************************655555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.808	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.3E-9	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.18E-7	3	47	No hit	No description
Pfam	PF00643	7.3E-6	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.343	59	106	IPR000315	B-box-type zinc finger
SMART	SM00336	2.8E-15	59	106	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.3E-5	62	102	IPR000315	B-box-type zinc finger
CDD	cd00021	4.34E-7	63	106	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MLVRCDVCGA EPAAVLCCAD EAALCSACDR SVHRANKLAH KHRRIPLLQP SGDSSPAAAA 60 APLCDVCKER RGLVFCVEDR AILCADCDDP IHSANDLTAK HSRFLLVGAK LSAALVDQSL 120 PSPDDCGRGN GTGEPDGVAA AICAQDSCTA KSSALDCSNS YGAGAGGGSS SSSISDYLTN 180 ICPGWRVDDL LFDDAAFSAA SNAGCDEHEQ VPSLDADLFD VVAGRPGKRG AWYGGGALGL 240 EKVSAASIAV PTAAKQQGRV RERHWSCDSD SDVFAVPEIS PQPLAKKARP PATSF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G289800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038450	1e-117	BT038450.1 Zea mays full-length cDNA clone ZM_BFb0234M06 mRNA, complete cds.
GenBank	EU968073	1e-117	EU968073.1 Zea mays clone 313792 salt tolerance-like protein mRNA, complete cds.
GenBank	HQ858776	1e-117	HQ858776.1 Zea mays clone UT1762 ORPHAN transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012701127.1	0.0	B-box zinc finger protein 20
TrEMBL	K3XYI5	0.0	K3XYI5_SETIT; Uncharacterized protein
STRING	Si006993m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12100	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	4e-39	salt tolerance homolog2

Link Out ? help Back to Top
Phytozome	Sevir.4G289800.1.p