PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G285400.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARR-B | ||||||||
Protein Properties | Length: 675aa MW: 73771 Da PI: 4.7613 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 60.8 | 2.7e-19 | 192 | 248 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsek....AtPktilelmkvkgLtlehvkSHLQkYRl 55 r++Wt +LHe+F++a+e LG + + A P il+lm+vkgLt +++ SHLQk+Rl Sevir.4G285400.4.p 192 RVKWTIDLHEKFLDAIEVLGDKTVrvtdAKPEGILKLMNVKGLTSKQISSHLQKHRL 248 99*****************87643333399**************************7 PP | |||||||
2 | Response_reg | 27.7 | 1.4e-10 | 6 | 117 | 1 | 104 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTT.SEHHHHHHHHHHHT...TTSEEEEEESTTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempg.mdGlellkeireee...pklpiivvtahge 82 vl+ dD+p+ ++++ ++l ++g+ +v +++ al+ +k +d Dl+l + + + + G+ + +e+ + ++p i ++a+++ Sevir.4G285400.4.p 6 VLLLDDNPTSLRIISNMLVESGF-KVFPFRTVGLALDFVKSRDaieeeLDLVLAEVHLRNiVPGSLANSELLHHIlneLQVPLITMGAYDD 95 899********************.*****************9999**********9999866676666666444434568*********** PP HHHHHHHHHTTESEEEESS--H CS Response_reg 83 eedalealkaGakdflsKpfdp 104 ee + e + +Ga ++ Kp + Sevir.4G285400.4.p 96 EEAISEHVALGACSHVLKPLHA 117 *******************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.42E-14 | 1 | 132 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 4.0E-14 | 3 | 161 | No hit | No description |
PROSITE profile | PS50110 | 22.385 | 5 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.4E-7 | 6 | 120 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.13E-7 | 7 | 114 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 189 | 250 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-12 | 191 | 252 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-6 | 192 | 247 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 2.8E-15 | 192 | 248 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence Send to blast |
MGNLSVLLLD DNPTSLRIIS NMLVESGFKV FPFRTVGLAL DFVKSRDAIE EELDLVLAEV 60 HLRNIVPGSL ANSELLHHIL NELQVPLITM GAYDDEEAIS EHVALGACSH VLKPLHAGSL 120 NILKQKALEH KFKKATPQGP ISSRTQSRMV SSFTKRPQEM LVLDRNDLPN PGSNEFEVPK 180 VRKARGSEKP GRVKWTIDLH EKFLDAIEVL GDKTVRVTDA KPEGILKLMN VKGLTSKQIS 240 SHLQKHRLLQ RNAKQGGQHQ RNASRKPVSE LIGSAHNAAT TESITPTVDA DSREVYPSRL 300 WTQVKEAAVL KTCMYTCASG IYRGDRKSVW DEYEKDLQKD FSTSSRRWQQ IGVPLSKCQL 360 PVKNNVVIDA GVSSEALKAA GEIGYGASIE SSDSSSLSAG LVDQVGENNR TKAAGINDNV 420 GNINLLEGTM NKEHTAALDP SDLFAFLQSN NVDLLGPPYG REEDTPYWMS QPLEGLQNQQ 480 NLGLEDPLQV DDAWNKGLAS LSLINIDGPM TQEATVQNAP QEATIQNDPV NNPVMPIAQD 540 DGLSLVQQYL GLEDLLQVDN AWNKGLASPS VVNIDGPMAQ EGTIQNPPAH NPEKPIAQDD 600 GFSQDQQNLG LEDLLQVDNE WNKGLASPSV INIDGPMAQA GTIQNPPAHN PVKPTAQDDE 660 FWSWSPLGDF DMLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G285400.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681535.1 | 0.0 | uncharacterized protein LOC101775816 isoform X1 | ||||
TrEMBL | A0A368QYW0 | 0.0 | A0A368QYW0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Db00207.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 7e-24 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G285400.4.p |