PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G285400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARR-B | ||||||||
Protein Properties | Length: 670aa MW: 73213.4 Da PI: 4.7567 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 69 | 7.4e-22 | 192 | 243 | 3 | 55 |
G2-like 3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 r++Wt +LHe+F++a+e L G ++A P il+lm+vkgLt +++ SHLQk+Rl Sevir.4G285400.3.p 192 RVKWTIDLHEKFLDAIEVL-GDKNAKPEGILKLMNVKGLTSKQISSHLQKHRL 243 99*****************.9*******************************7 PP | |||||||
2 | Response_reg | 27.7 | 1.4e-10 | 6 | 117 | 1 | 104 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTT.SEHHHHHHHHHHHT...TTSEEEEEESTTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempg.mdGlellkeireee...pklpiivvtahge 82 vl+ dD+p+ ++++ ++l ++g+ +v +++ al+ +k +d Dl+l + + + + G+ + +e+ + ++p i ++a+++ Sevir.4G285400.3.p 6 VLLLDDNPTSLRIISNMLVESGF-KVFPFRTVGLALDFVKSRDaieeeLDLVLAEVHLRNiVPGSLANSELLHHIlneLQVPLITMGAYDD 95 899********************.*****************9999**********9999866676666666444434568*********** PP HHHHHHHHHTTESEEEESS--H CS Response_reg 83 eedalealkaGakdflsKpfdp 104 ee + e + +Ga ++ Kp + Sevir.4G285400.3.p 96 EEAISEHVALGACSHVLKPLHA 117 *******************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 2.42E-14 | 1 | 132 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.9E-14 | 3 | 161 | No hit | No description |
PROSITE profile | PS50110 | 22.385 | 5 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.3E-7 | 6 | 120 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.86E-7 | 7 | 114 | No hit | No description |
PROSITE profile | PS51294 | 11.449 | 187 | 246 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-21 | 189 | 245 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.33E-14 | 191 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-17 | 192 | 243 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-6 | 192 | 242 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MGNLSVLLLD DNPTSLRIIS NMLVESGFKV FPFRTVGLAL DFVKSRDAIE EELDLVLAEV 60 HLRNIVPGSL ANSELLHHIL NELQVPLITM GAYDDEEAIS EHVALGACSH VLKPLHAGSL 120 NILKQKALEH KFKKATPQGP ISSRTQSRMV SSFTKRPQEM LVLDRNDLPN PGSNEFEVPK 180 VRKARGSEKP GRVKWTIDLH EKFLDAIEVL GDKNAKPEGI LKLMNVKGLT SKQISSHLQK 240 HRLLQRNAKQ GGQHQRNASR KPVSELIGSA HNAATTESIT PTVDADSREV YPSRLWTQVK 300 EAAVLKTCMY TCASGIYRGD RKSVWDEYEK DLQKDFSTSS RRWQQIGVPL SKCQLPVKNN 360 VVIDAGVSSE ALKAAGEIGY GASIESSDSS SLSAGLVDQV GENNRTKAAG INDNVGNINL 420 LEGTMNKEHT AALDPSDLFA FLQSNNVDLL GPPYGREEDT PYWMSQPLEG LQNQQNLGLE 480 DPLQVDDAWN KGLASLSLIN IDGPMTQEAT VQNAPQEATI QNDPVNNPVM PIAQDDGLSL 540 VQQYLGLEDL LQVDNAWNKG LASPSVVNID GPMAQEGTIQ NPPAHNPEKP IAQDDGFSQD 600 QQNLGLEDLL QVDNEWNKGL ASPSVINIDG PMAQAGTIQN PPAHNPVKPT AQDDEFWSWS 660 PLGDFDMLI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G285400.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660566.2 | 0.0 | uncharacterized protein LOC101775816 isoform X2 | ||||
TrEMBL | A0A368QZ01 | 0.0 | A0A368QZ01_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Db00207.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 4e-25 | response regulator 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G285400.3.p |