PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G285400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 670aa    MW: 73213.4 Da    PI: 4.7567
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G285400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like697.4e-22192243355
             G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         r++Wt +LHe+F++a+e L G ++A P  il+lm+vkgLt +++ SHLQk+Rl
  Sevir.4G285400.2.p 192 RVKWTIDLHEKFLDAIEVL-GDKNAKPEGILKLMNVKGLTSKQISSHLQKHRL 243
                         99*****************.9*******************************7 PP
2Response_reg27.71.4e-1061171104
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTT.SEHHHHHHHHHHHT...TTSEEEEEESTTT CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempg.mdGlellkeireee...pklpiivvtahge 82 
                         vl+ dD+p+ ++++ ++l ++g+ +v  +++   al+ +k +d      Dl+l  + + + + G+ + +e+  +     ++p i ++a+++
  Sevir.4G285400.2.p   6 VLLLDDNPTSLRIISNMLVESGF-KVFPFRTVGLALDFVKSRDaieeeLDLVLAEVHLRNiVPGSLANSELLHHIlneLQVPLITMGAYDD 95 
                         899********************.*****************9999**********9999866676666666444434568*********** PP

                         HHHHHHHHHTTESEEEESS--H CS
        Response_reg  83 eedalealkaGakdflsKpfdp 104
                         ee + e + +Ga  ++ Kp + 
  Sevir.4G285400.2.p  96 EEAISEHVALGACSHVLKPLHA 117
                         *******************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.42E-141132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.9E-143161No hitNo description
PROSITE profilePS5011022.3855128IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-76120IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.86E-77114No hitNo description
PROSITE profilePS5129411.449187246IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-21189245IPR009057Homeodomain-like
SuperFamilySSF466891.33E-14191247IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-17192243IPR006447Myb domain, plants
PfamPF002491.5E-6192242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MGNLSVLLLD DNPTSLRIIS NMLVESGFKV FPFRTVGLAL DFVKSRDAIE EELDLVLAEV  60
HLRNIVPGSL ANSELLHHIL NELQVPLITM GAYDDEEAIS EHVALGACSH VLKPLHAGSL  120
NILKQKALEH KFKKATPQGP ISSRTQSRMV SSFTKRPQEM LVLDRNDLPN PGSNEFEVPK  180
VRKARGSEKP GRVKWTIDLH EKFLDAIEVL GDKNAKPEGI LKLMNVKGLT SKQISSHLQK  240
HRLLQRNAKQ GGQHQRNASR KPVSELIGSA HNAATTESIT PTVDADSREV YPSRLWTQVK  300
EAAVLKTCMY TCASGIYRGD RKSVWDEYEK DLQKDFSTSS RRWQQIGVPL SKCQLPVKNN  360
VVIDAGVSSE ALKAAGEIGY GASIESSDSS SLSAGLVDQV GENNRTKAAG INDNVGNINL  420
LEGTMNKEHT AALDPSDLFA FLQSNNVDLL GPPYGREEDT PYWMSQPLEG LQNQQNLGLE  480
DPLQVDDAWN KGLASLSLIN IDGPMTQEAT VQNAPQEATI QNDPVNNPVM PIAQDDGLSL  540
VQQYLGLEDL LQVDNAWNKG LASPSVVNID GPMAQEGTIQ NPPAHNPEKP IAQDDGFSQD  600
QQNLGLEDLL QVDNEWNKGL ASPSVINIDG PMAQAGTIQN PPAHNPVKPT AQDDEFWSWS  660
PLGDFDMLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G285400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660566.20.0uncharacterized protein LOC101775816 isoform X2
TrEMBLA0A368QZ010.0A0A368QZ01_SETIT; Uncharacterized protein
STRINGPavir.Db00207.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.24e-25response regulator 1