PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G285400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 675aa    MW: 73771 Da    PI: 4.7613
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G285400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.82.7e-19192248355
             G2-like   3 rlrWtpeLHerFveaveqLGGsek....AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         r++Wt +LHe+F++a+e LG + +    A P  il+lm+vkgLt +++ SHLQk+Rl
  Sevir.4G285400.1.p 192 RVKWTIDLHEKFLDAIEVLGDKTVrvtdAKPEGILKLMNVKGLTSKQISSHLQKHRL 248
                         99*****************87643333399**************************7 PP
2Response_reg27.71.4e-1061171104
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.....ESEEEEESSCTT.SEHHHHHHHHHHHT...TTSEEEEEESTTT CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.....pDlillDiempg.mdGlellkeireee...pklpiivvtahge 82 
                         vl+ dD+p+ ++++ ++l ++g+ +v  +++   al+ +k +d      Dl+l  + + + + G+ + +e+  +     ++p i ++a+++
  Sevir.4G285400.1.p   6 VLLLDDNPTSLRIISNMLVESGF-KVFPFRTVGLALDFVKSRDaieeeLDLVLAEVHLRNiVPGSLANSELLHHIlneLQVPLITMGAYDD 95 
                         899********************.*****************9999**********9999866676666666444434568*********** PP

                         HHHHHHHHHTTESEEEESS--H CS
        Response_reg  83 eedalealkaGakdflsKpfdp 104
                         ee + e + +Ga  ++ Kp + 
  Sevir.4G285400.1.p  96 EEAISEHVALGACSHVLKPLHA 117
                         *******************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.42E-141132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.0E-143161No hitNo description
PROSITE profilePS5011022.3855128IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.4E-76120IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.13E-77114No hitNo description
Gene3DG3DSA:1.10.10.601.1E-18189250IPR009057Homeodomain-like
SuperFamilySSF466891.08E-12191252IPR009057Homeodomain-like
PfamPF002494.8E-6192247IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.8E-15192248IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MGNLSVLLLD DNPTSLRIIS NMLVESGFKV FPFRTVGLAL DFVKSRDAIE EELDLVLAEV  60
HLRNIVPGSL ANSELLHHIL NELQVPLITM GAYDDEEAIS EHVALGACSH VLKPLHAGSL  120
NILKQKALEH KFKKATPQGP ISSRTQSRMV SSFTKRPQEM LVLDRNDLPN PGSNEFEVPK  180
VRKARGSEKP GRVKWTIDLH EKFLDAIEVL GDKTVRVTDA KPEGILKLMN VKGLTSKQIS  240
SHLQKHRLLQ RNAKQGGQHQ RNASRKPVSE LIGSAHNAAT TESITPTVDA DSREVYPSRL  300
WTQVKEAAVL KTCMYTCASG IYRGDRKSVW DEYEKDLQKD FSTSSRRWQQ IGVPLSKCQL  360
PVKNNVVIDA GVSSEALKAA GEIGYGASIE SSDSSSLSAG LVDQVGENNR TKAAGINDNV  420
GNINLLEGTM NKEHTAALDP SDLFAFLQSN NVDLLGPPYG REEDTPYWMS QPLEGLQNQQ  480
NLGLEDPLQV DDAWNKGLAS LSLINIDGPM TQEATVQNAP QEATIQNDPV NNPVMPIAQD  540
DGLSLVQQYL GLEDLLQVDN AWNKGLASPS VVNIDGPMAQ EGTIQNPPAH NPEKPIAQDD  600
GFSQDQQNLG LEDLLQVDNE WNKGLASPSV INIDGPMAQA GTIQNPPAHN PVKPTAQDDE  660
FWSWSPLGDF DMLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G285400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681535.10.0uncharacterized protein LOC101775816 isoform X1
TrEMBLA0A368QYW00.0A0A368QYW0_SETIT; Uncharacterized protein
STRINGPavir.Db00207.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130171928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.27e-24response regulator 1