PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G256600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 359aa    MW: 38027 Da    PI: 4.7754
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G256600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17273309135
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C++Cgt+   Tp++Rrgpdg++tLCnaCGl+++ kgl
  Sevir.4G256600.1.p 273 CHHCGTSAtaTPMMRRGPDGPRTLCNACGLMWANKGL 309
                         ******9999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.9E-11136171IPR010399Tify domain
PROSITE profilePS5132014.985136171IPR010399Tify domain
PfamPF062009.3E-13139170IPR010399Tify domain
PROSITE profilePS5101713.404197239IPR010402CCT domain
PfamPF062038.4E-16197239IPR010402CCT domain
SMARTSM004016.6E-13267325IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.618267326IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.66E-12271321No hitNo description
CDDcd002023.57E-15272315No hitNo description
Gene3DG3DSA:3.30.50.102.2E-16272314IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.2E-15273309IPR000679Zinc finger, GATA-type
PROSITE patternPS003440273300IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MSHHDGSKPY QPRRGPERHP QPADEVAAPP PAAVAPTVDH LAAVAAEAEA LNRYTEEQQQ  60
QQMLQGHEQA GEDEEEEDGE EEEMEEDEDE QEGGQDGGVG AEHVPMDADA AAAAAAAAAA  120
GAQMDPHGSM VPGAVPPMAN NQLTLSFQGE VYVFDSVSPD KVQAVLLLLG GRELNHPGLG  180
AGSSSGAYNK RLNFPHRVAS LMRFREKRKE RNFDKKIRYS VRKEVALRMQ RNRGQFTSSK  240
PKPDEIAASE MVTADGSPNW GSVEGRPPSA AECHHCGTSA TATPMMRRGP DGPRTLCNAC  300
GLMWANKGLL RDLSKSPVPL QAVQSAPVLD GGQNGSVIAA PGSELENPAA AMANGHES*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G256600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966123.10.0GATA transcription factor 20 isoform X1
SwissprotQ5Z4U51e-142GAT20_ORYSJ; GATA transcription factor 20
TrEMBLK3XXU20.0K3XXU2_SETIT; Uncharacterized protein
STRINGSi006750m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-72ZIM-like 1