PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G218000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 344aa    MW: 37550.2 Da    PI: 10.3828
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G218000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.12.4e-112801895
                        --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                        +p +fa+  gg+ +    + l ++ g++W   l+  +++g+     l++GW eF+ a+g+++g +vvF+l++r  +  +++
  Sevir.4G218000.1.p  2 VPGEFAAWLGGEARAAAAVLLVSPLGKVWHADLRRAGGGGGpgpLQLAGGWAEFAAAHGVRAGWSVVFRLERRGVA--TLR 80
                        688999888999999999***************6644444488899***********************9987666..444 PP
2B348.81.2e-152623391595
                         -EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3  15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         ++ +  +f+++ g+  +++  +tl+++ g  rsW+v+++ + +  +y+ ++GWk+F+ +n+LkegD+++F+++++  +  +v+
  Sevir.4G218000.1.p 262 LFAVKGSFCSSVGLAGACE--ITLKTTMGntRSWRVRFN-TANTYGYITGQGWKRFCLENKLKEGDSCTFSVIET--TVWHVT 339
                         4677889**9999997776..5555555555*******4.44445699***********************7764..333555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.464185IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-12287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-11287IPR015300DNA-binding pseudobarrel domain
PfamPF023627.5E-9281IPR003340B3 DNA binding domain
CDDcd100177.84E-82075No hitNo description
SuperFamilySSF1019364.71E-8103172IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-8103175IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.782104208IPR003340B3 DNA binding domain
SMARTSM010190.55107208IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-19246341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-16247341IPR015300DNA-binding pseudobarrel domain
CDDcd100177.72E-11248340No hitNo description
SMARTSM010191.3E-7250343IPR003340B3 DNA binding domain
PfamPF023626.2E-13263333IPR003340B3 DNA binding domain
PROSITE profilePS5086311.871280343IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
RVPGEFAAWL GGEARAAAAV LLVSPLGKVW HADLRRAGGG GGPGPLQLAG GWAEFAAAHG  60
VRAGWSVVFR LERRGVATLR AFDAAGCLAR FCTPLAGVAA GKNRPRFIRV LNADDLEKMR  120
IPDEFVQEHL TDTHPSNKRA MIFSPLGKFW RVELDRDQPG VLLGDGWSGC LKEYEAATAD  180
MTDDAIGRQI TVPQQGDKEL CVSPVKKKRK TRNENTCLAV YRKKPNHSPI SVKKAVSQKK  240
LVSIEPRHSF TKRITGYKLT SLFAVKGSFC SSVGLAGACE ITLKTTMGNT RSWRVRFNTA  300
NTYGYITGQG WKRFCLENKL KEGDSCTFSV IETTVWHVTI VSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205223KKKRKTRNENTCLAVYRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G218000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681867.10.0LOW QUALITY PROTEIN: putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL71e-110Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A368QWE80.0A0A368QWE8_SETIT; Uncharacterized protein
STRINGSi008427m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.14e-09B3 family protein