PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.4G214700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB

Protein Properties

Length: 316aa MW: 33465.5 Da PI: 8.0145

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G214700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.5e-19	11	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd+ l ++v+++G ++W++I r+++ gR++k+c++rw + Sevir.4G214700.1.p 11 RGPWSPEEDDALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 56 89****************************.*********985 PP
2	Myb_DNA-binding	55.1	1.8e-17	63	105	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +v+a+++lG++ W++Iar ++ gRt++ +k++w+ Sevir.4G214700.1.p 63 RRPFTAEEDAAIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 105 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.62	6	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.71E-31	8	104	IPR009057	Homeodomain-like
SMART	SM00717	5.3E-17	10	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-18	11	56	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-25	12	64	IPR009057	Homeodomain-like
CDD	cd00167	2.97E-16	13	55	No hit	No description
SMART	SM00717	5.3E-16	62	110	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.286	63	112	IPR017930	Myb domain
Pfam	PF00249	8.9E-15	63	105	IPR001005	SANT/Myb domain
CDD	cd00167	1.29E-12	65	105	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.2E-23	65	112	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MGAEAECDRI RGPWSPEEDD ALRRLVERHG ARNWTAIGRE IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTAEE DAAIVRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNCSLKR KLAAATAASG 120 AVAGAGADEF DARPCKRVSL SPDSPSSGSG TVSDRSDLSH GPGAGSGSGS GQIYRPVPRS 180 GGFEPADCAM SRPVEDDDPL TSLSLSLPGT DQRFHHDRAH SQFQELPPSP SPPSPSPPPP 240 PAPVAATATS PYPFNPDFMA VMQELIRTEV QRYMASVGVR AGCGPAGGAE LCMPQLVEGV 300 MRAAAERVGA VGRIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-39	8	112	4	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G214700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679429	1e-150	HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965791.1	0.0	transcription factor MYB44
TrEMBL	K3XYD0	0.0	K3XYD0_SETIT; Uncharacterized protein
STRING	Si006938m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	2e-56	myb domain protein r1

Link Out ? help Back to Top
Phytozome	Sevir.4G214700.1.p