PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G192500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | Dof | ||||||||
Protein Properties | Length: 296aa MW: 30074.4 Da PI: 7.4356 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.8 | 8.7e-37 | 37 | 93 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++cprCds +tkfCyynny+l+qPr+fC+aCrryWtkGG lrnvPvGgg+rk + Sevir.4G192500.1.p 37 AEVRCPRCDSPDTKFCYYNNYNLAQPRHFCRACRRYWTKGGHLRNVPVGGGCRKPRP 93 5789**************************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.7E-31 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.332 | 39 | 93 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-20 | 39 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 41 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MQELQPIPGL AGRLFGSGGA AAAAIGLLRR HGGSSAAEVR CPRCDSPDTK FCYYNNYNLA 60 QPRHFCRACR RYWTKGGHLR NVPVGGGCRK PRPRRPAAAA ADGRGKDGVH RDGKAPRSGF 120 AGAASSSSPT AAGDADAPVS GAFSVVTEPS VPRSGGVAEA SAETGSFAAG DTRALLVPPP 180 APMFADQASV FASLFAPPRP LSAFGSSAQP QPEQAEERVA ASLLAAEQPP PSCTAAFTDT 240 APFAAGSDGA LSAGPSDWPT AGIFELAGGN AGDASLPEHW NHGSWTDPDP AVYLP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G192500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374973 | 6e-66 | AK374973.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081L07. | |||
GenBank | AM084352 | 6e-66 | AM084352.1 Hordeum vulgare subsp. vulgare dof4 gene for dof zinc finger protein 4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965236.1 | 0.0 | dof zinc finger protein 4 | ||||
TrEMBL | K3XYK3 | 0.0 | K3XYK3_SETIT; Uncharacterized protein | ||||
STRING | Si007011m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6496 | 30 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 1e-27 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G192500.1.p |