PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G176700.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 348aa MW: 39189.4 Da PI: 8.0467 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4.2e-06 | 5 | 27 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC+ff+ G C G+ C F+H+ Sevir.4G176700.4.p 5 RVLCKFFMH-GACLKGEYCEFSHD 27 78***8888.*************5 PP | |||||||
2 | zf-CCCH | 28.5 | 2.6e-09 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Sevir.4G176700.4.p 35 VCTFYQK-GACSYGSRCRYDHV 55 5******.*************7 PP | |||||||
3 | zf-CCCH | 19.4 | 1.8e-06 | 151 | 172 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C+yG+ C+ +Hg Sevir.4G176700.4.p 151 PICS-FAAAGNCPYGEGCPQMHG 172 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.77 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-7 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-5 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 32 | 54 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 32 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.9E-7 | 35 | 55 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.615 | 147 | 174 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0064 | 148 | 173 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 7.07E-12 | 205 | 280 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 4.2E-10 | 209 | 275 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00175 | 215 | 275 | No hit | No description |
SMART | SM00184 | 2.8E-7 | 216 | 273 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.2E-7 | 216 | 273 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.224 | 216 | 274 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 240 | 249 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 10.624 | 303 | 332 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.1 | 303 | 331 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSTNRVLCKF FMHGACLKGE YCEFSHDWKD QANNVCTFYQ KGACSYGSRC RYDHVKVSRN 60 PTVPPPPPSS STARLASTSR QLLSSSHLPH TGHQTDSSNQ RNQISVDMLA HSTSKPAWSN 120 DFQHVVSEDE IDWSSNQTLQ NQTKLKPSDL PICSFAAAGN CPYGEGCPQM HGDLCTTCGK 180 MCLHPYRSDE REEHIKLCAK NHKRLEALKR SQEIECSVCL DRVLSKPTAA ERKFGLLSEC 240 DHPFCIACIR NWRSNSPASG MDVNSALRAC PICRKLSYYV IPSVLWYFSK EEKEEITESY 300 KSKLKSIDCK YFDFGTGSCP FGTSCFYRRV VELSTSLPER FLATYVQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G176700.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065629 | 0.0 | BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds. | |||
GenBank | JX428471 | 0.0 | JX428471.1 Zea mays subsp. mays clone pUT3067 C3H5 C3H type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965338.1 | 0.0 | E3 ubiquitin-protein ligase makorin | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | K3XXQ2 | 0.0 | K3XXQ2_SETIT; Uncharacterized protein | ||||
STRING | Si006712m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-130 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G176700.4.p |
Publications ? help Back to Top | |||
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