PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G119100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 440aa    MW: 47279.5 Da    PI: 8.1562
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G119100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15e-10148186240
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                         ++ k++rr+++NReAAr+sR RKka+i eLe    +L +
  Sevir.4G119100.1.p 148 RDQKVQRRLAQNREAARKSRMRKKAYIVELESSRVKLAQ 186
                         6789**************************974333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-8145195No hitNo description
SMARTSM003381.1E-7147243IPR004827Basic-leucine zipper domain
PfamPF001703.5E-7149187IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.335149193IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-7151194No hitNo description
CDDcd147082.17E-20151203No hitNo description
PROSITE patternPS000360154169IPR004827Basic-leucine zipper domain
PfamPF141443.8E-28233309IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MHHPSHVFRA EQGAGGYHHH VGDGALLPEL PRSPNYSSKS SSNLTVSTFV PPLAVAHGGV  60
APSFGMAPPG MAAAADDGRF CLPWAAPAGA AQFENWGDSG IVVTSPLTEA TSTDVSGDKQ  120
QAQMGGAMTQ SVAVHVDSCA VSKDGSSRDQ KVQRRLAQNR EAARKSRMRK KAYIVELESS  180
RVKLAQLEQE LQRARQQGMF IASGRAGDLG GSTGGASAFD LEYARWLDEH QRHMTDLRVA  240
LAAPQIGDDD LRVLVDGAML HYEHMFRLKG AATRADVFHV LSGMWASPAE RFFMWLGGFR  300
SSELLKVLAG HVEPLTEQQL VGICSLRQSS QQAEDALSQG MEALQQALSD TLAAAAAAGA  360
GAGAADSVTN YMGQMAVAMG KLATVENFLR QADLLRQQTL QQMRRILTTR QAARALLVVS  420
DYFSRLRALS SLWLTRPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G119100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851450.0BT085145.1 Zea mays full-length cDNA clone ZM_BFb0304K15 mRNA, complete cds.
GenBankKJ7275600.0KJ727560.1 Zea mays clone pUT5420 bZIP transcription factor (bZIP57) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660509.20.0transcription factor TGAL3
SwissprotQ5Z6N91e-173TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A368QTE50.0A0A368QTE5_SETIT; Uncharacterized protein
STRINGPavir.J20659.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-112bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]