PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G084800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 301aa    MW: 33862.9 Da    PI: 9.3157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G084800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-09127171347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT+  + l++++ + +G g+Wk I++++ k+Rt+ q+ s+ qky
  Sevir.4G084800.1.p 127 FWTKPKHRLFLRGLHVYGHGNWKNISKYFVKTRTPMQVSSHSQKY 171
                         599999*************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-8118175IPR009057Homeodomain-like
PROSITE profilePS5129412.343120176IPR017930Myb domain
SuperFamilySSF466891.27E-14122175IPR009057Homeodomain-like
SMARTSM007174.6E-5124174IPR001005SANT/Myb domain
CDDcd001674.16E-7128167No hitNo description
TIGRFAMsTIGR015571.0E-10128175IPR006447Myb domain, plants
PfamPF002491.1E-6128171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MVKSLIARYN SDSSYTNDMN KKHNDIVNVV HATLPLKEKH QIIHLYADLM MEMMQSGISD  60
GSYHSAMTSR DLSNNNFEIP VEDPTIDNMD MLLGYPTMEI RATRVRVAQE VPRRQPTSQM  120
EKKHIGFWTK PKHRLFLRGL HVYGHGNWKN ISKYFVKTRT PMQVSSHSQK YFQRQGNSTR  180
KQRYSINDVG LYDVEPWAQN NTSSKEGSTF TSSANNPNRY GANGQHATMN NLTQSLNLYH  240
ASEATNNNGQ AAAGAGDQQM RATSSSAPPI MEGAGGPQVA WASDQLGDFF PDQMMNMDMF  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G084800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966689.11e-137uncharacterized protein LOC101759880
TrEMBLA0A368QSI40.0A0A368QSI4_SETIT; Uncharacterized protein
STRINGSi008720m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-19Homeodomain-like transcriptional regulator